Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 9.0.2 Minor Release
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Labels:
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Story Points:0.25
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Sprint:Fall 2018 Sprint 3
Description
Modify species.txt in IGB codebase
Add line from:
http://igbquickload.org/quickload/species.txt
Preserve alphabetical order in file.
Attachments
Issue Links
Activity
| Assignee | Ann Loraine [ aloraine ] |
| Description |
Add (or check to see if it is already there) the 4.04 DM potato genome to IGB synonyms.txt and species.txt files.
IGB name for the assembly is: S_tuberosum_DM_Jan_2016 To my knowledge, no other genome browser system is supporting this assembly, so there are no synonyms at the moment. For the name of the species, see the corresponding line in "contents.txt" in contents.txt genome assembly listing. See https://svn.bioviz.org/viewvc (Feel free to ask Dr. Loraine if you have questions.) |
Add (or check to see if it is already there) the 4.03 DM potato genome to IGB synonyms.txt and species.txt files.
To my knowledge, no other genome browser system is supporting this assembly, so there are no synonyms at the moment. For the name of the species, see the corresponding line in "contents.txt" in contents.txt genome assembly listing. See https://svn.bioviz.org/viewvc (Feel free to ask Dr. Loraine if you have questions.) |
| Description |
Add (or check to see if it is already there) the 4.03 DM potato genome to IGB synonyms.txt and species.txt files.
To my knowledge, no other genome browser system is supporting this assembly, so there are no synonyms at the moment. For the name of the species, see the corresponding line in "contents.txt" in contents.txt genome assembly listing. See https://svn.bioviz.org/viewvc (Feel free to ask Dr. Loraine if you have questions.) |
Modify species.txt in IGB codebase
Add line from: http://igbquickload.org/quickload/species.txt Preserve alphabetical order in file. |
| Labels | Beginner | Intermediate |
| Comment |
[ Correction:
*Only* modify species.txt Add line from: http://igbquickload.org/quickload/species.txt Preserve alphabetical order in file. Also, note we are now supporting the July 2011 version 4.03 release and not the version 4.04 Jan 2016 release. ] |
| Summary | Add potato genome assembly synonyms to IGB species.txt and synonyms.txt | Add potato genome assembly synonyms to IGB species.txt |
| Status | Open [ 1 ] | In Progress [ 3 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Rank | Ranked higher |
| Rank | Ranked lower |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | Reviewing [ 10301 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Reviewing [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Resolution | Done [ 10000 ] | |
| Status | Needs Testing [ 10002 ] | Closed [ 6 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Workflow | Loraine Lab Workflow [ 18129 ] | Fall 2019 Workflow Update [ 19955 ] |
| Workflow | Fall 2019 Workflow Update [ 19955 ] | Revised Fall 2019 Workflow Update [ 22076 ] |