Details
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Type:
Improvement
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Status: To-Do (View Workflow)
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:5
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Epic Link:
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Sprint:Fall 2018 Sprint 4, Fall 2018 Sprint 5
Description
Deletions in IGB are currently shown as a non-selectable glyph with underscores/dashes. Following soft-clip implementation, the underscore deletion glyph stopped being drawn (possible bug). However, this behavior can be used to improve deletion.
Implement a selectable deletion glyph. Easiest way would be to copy how soft-clipping/insertions are currently implemented as a separate child sym. This will require examining BAMSym, XAM, and AnnotationGlyphFactory classes.
I imagine the implementation to begin with being an invisible selectable glyph over the deletion (which currently appears as a thin line connecting the matching regions of the read). Tooltips and get info should show the specific information of the deletion, similar to soft-clips or insertions.
Attachments
Issue Links
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Activity
| Attachment | newDeletion [ 14179 ] |
| Attachment | oldDeletionGlyph [ 14180 ] |
| Attachment | newDeletion.png [ 14188 ] | |
| Attachment | oldDeletionGlyph.png [ 14189 ] |
| Sprint | Fall 2018 Sprint 4 [ 54 ] |
| Rank | Ranked higher |
| Sprint | Fall 2018 Sprint 4 [ 54 ] | Fall 2018 Sprint 4, Fall 2018 Sprint 5 [ 54, 55 ] |
| Rank | Ranked higher |
| Fix Version/s | 9.1.0 Major Release [ 10601 ] |
| Rank | Ranked higher |
| Rank | Ranked higher |
| Link | This issue relates to IGBF-529 [ IGBF-529 ] |
| Rank | Ranked higher |
| Workflow | Loraine Lab Workflow [ 18154 ] | Fall 2019 Workflow Update [ 18918 ] |
| Workflow | Fall 2019 Workflow Update [ 18918 ] | Revised Fall 2019 Workflow Update [ 21045 ] |
| Status | Open [ 1 ] | To-Do [ 10305 ] |
| Fix Version/s | 9.1.0 Major Release [ 10601 ] |
| Epic Link | IGBF-1765 [ 17855 ] |
| Labels | Advanced |