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  1. IGB
  2. IGBF-1447

Implement selectable deletion glyph

        Details

        • Type: Improvement
        • Status: To-Do (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          Deletions in IGB are currently shown as a non-selectable glyph with underscores/dashes. Following soft-clip implementation, the underscore deletion glyph stopped being drawn (possible bug). However, this behavior can be used to improve deletion.

          Implement a selectable deletion glyph. Easiest way would be to copy how soft-clipping/insertions are currently implemented as a separate child sym. This will require examining BAMSym, XAM, and AnnotationGlyphFactory classes.

          I imagine the implementation to begin with being an invisible selectable glyph over the deletion (which currently appears as a thin line connecting the matching regions of the read). Tooltips and get info should show the specific information of the deletion, similar to soft-clips or insertions.

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              relates to

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-1291 Show soft-clipped bases in BAM files

              • Major - Major loss of function.
              • Closed

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                  • Assignee:
                    Unassigned
                    Reporter:
                    nfreese Nowlan Freese
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                    Dates

                    • Created:
                      Updated: