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  1. IGB
  2. IGBF-1491

Add C.elegans Feb 2013 genome

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        • Story Points:
          0.5
        • Sprint:
          Winter 2018 Sprint 3

          Description

          HIGH PRIORITY GENOME
          New assembly (WBcel235/ce11) released Feb.2013

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              9 older comments
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              ann.loraine Ann Loraine added a comment -

              Modify "url" attribute for the gene annotations file to ensure that when a user clicks "i" in the IGB interface it will open the genome directory in the user's browser. See annots.xml files for other genomes for syntax examples.

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              ann.loraine Ann Loraine added a comment - Modify "url" attribute for the gene annotations file to ensure that when a user clicks "i" in the IGB interface it will open the genome directory in the user's browser. See annots.xml files for other genomes for syntax examples.
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              ann.loraine Ann Loraine added a comment -

              Answer your question. Take a look. If it still doesn't make sense, leave it for Thursday & I'll explain then.

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              ann.loraine Ann Loraine added a comment - Answer your question. Take a look. If it still doesn't make sense, leave it for Thursday & I'll explain then.
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              Jill Jill Jenkins (Inactive) added a comment -

              I corrected the issue by reading the documentation and adding the directory name to the url attribute, mirroring other genomes.

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              Jill Jill Jenkins (Inactive) added a comment - I corrected the issue by reading the documentation and adding the directory name to the url attribute, mirroring other genomes.
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              ann.loraine Ann Loraine added a comment -

              Committed to svn:

              reg-10-23-251-93:quickload aloraine$ svn ci C_elegans_Feb_2013 -m "Add C. elegans Feb 2013 (WBcel235/ce11) genome assembly and gene models"
              Adding C_elegans_Feb_2013
              Adding (bin) C_elegans_Feb_2013/C_elegans_Feb_2013.2bit
              Adding (bin) C_elegans_Feb_2013/C_elegans_Feb_2013_refGene.bed.gz
              Adding (bin) C_elegans_Feb_2013/C_elegans_Feb_2013_refGene.bed.gz.tbi
              Adding C_elegans_Feb_2013/HEADER.md
              Adding C_elegans_Feb_2013/annots.xml
              Adding C_elegans_Feb_2013/genome.txt
              Transmitting file data ......done
              Committing transaction...
              Committed revision 89.

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              ann.loraine Ann Loraine added a comment - Committed to svn: reg-10-23-251-93:quickload aloraine$ svn ci C_elegans_Feb_2013 -m "Add C. elegans Feb 2013 (WBcel235/ce11) genome assembly and gene models" Adding C_elegans_Feb_2013 Adding (bin) C_elegans_Feb_2013/C_elegans_Feb_2013.2bit Adding (bin) C_elegans_Feb_2013/C_elegans_Feb_2013_refGene.bed.gz Adding (bin) C_elegans_Feb_2013/C_elegans_Feb_2013_refGene.bed.gz.tbi Adding C_elegans_Feb_2013/HEADER.md Adding C_elegans_Feb_2013/annots.xml Adding C_elegans_Feb_2013/genome.txt Transmitting file data ......done Committing transaction... Committed revision 89.
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              ann.loraine Ann Loraine added a comment -

              Issue is now complete.
              Re-assigning to original developer for record-keeping.

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              ann.loraine Ann Loraine added a comment - Issue is now complete. Re-assigning to original developer for record-keeping.

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                • Assignee:
                  Jill Jill Jenkins (Inactive)
                  Reporter:
                  Jill Jill Jenkins (Inactive)
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                  • Created:
                    Updated:
                    Resolved: