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  1. IGB
  2. IGBF-1498

Add C.albicans WO-1 Dec 2013 Assembly

        Details

        • Type: Updated Genome
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          1
        • Epic Link:
        • Sprint:
          Spring 2019 Sprint 2, Spring 2019 Sprint 3, Spring 2019 Sprint 4, Spring 2019 Sprint 5, Fall 2019 Sprint 2, Fall 2019 Sprint 3

          Attachments

          1. IGB view Reformatted file.pdf
            184 kB
            Jill Jenkins
          2. IGB view Std Procedure Output.pdf
            89 kB
            Jill Jenkins
          3. Reformatted file.pdf
            242 kB
            Jill Jenkins
          4. Standard Procedure Output.pdf
            200 kB
            Jill Jenkins
          5. Sublime Reformatted file.pdf
            256 kB
            Jill Jenkins
          6. Sublime view Std Proced Output.pdf
            219 kB
            Jill Jenkins

            Activity

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            8 older comments
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            Jill Jill Jenkins (Inactive) added a comment - - edited

            Resolved, thanks to Nolan! The annots.xml file was pointing to the GFF file and not the BED file - no corrective formatting required.

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            Jill Jill Jenkins (Inactive) added a comment - - edited Resolved, thanks to Nolan! The annots.xml file was pointing to the GFF file and not the BED file - no corrective formatting required.
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            ann.loraine Ann Loraine added a comment -

            Files in Dropbox folder don't reflect comments below.

            • annots.xml references C_albicans_WO-1_Jul_2010_refGene.bed.gz, which is not there
            • refGene should only be used for annotations obtained from UCSC database
            • there is a README.md file but no HEADER.md file
            Show
            ann.loraine Ann Loraine added a comment - Files in Dropbox folder don't reflect comments below. annots.xml references C_albicans_WO-1_Jul_2010_refGene.bed.gz, which is not there refGene should only be used for annotations obtained from UCSC database there is a README.md file but no HEADER.md file
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            Jill Jill Jenkins (Inactive) added a comment - - edited
            • This issue is for the Dec 2013 assembly. The annots points to C_albicans_WO-1_Dec_2013.bed.gz
            • I show no _refgene uses in this directory
            • Other (C_albicans) assemblies only have README.md files. Should all assemblies have HEADER.md?
            Show
            Jill Jill Jenkins (Inactive) added a comment - - edited This issue is for the Dec 2013 assembly. The annots points to C_albicans_WO-1_Dec_2013.bed.gz I show no _refgene uses in this directory Other (C_albicans) assemblies only have README.md files. Should all assemblies have HEADER.md?
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            ann.loraine Ann Loraine added a comment -

            Still to do:

            • Add HEADER.md summarizing where the files added to QL came from.
            Show
            ann.loraine Ann Loraine added a comment - Still to do: Add HEADER.md summarizing where the files added to QL came from.
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            ann.loraine Ann Loraine added a comment -

            Committed all files (except still-to-be-created HEADER.md file) to SVN repo.

            Show
            ann.loraine Ann Loraine added a comment - Committed all files (except still-to-be-created HEADER.md file) to SVN repo.

              People

              • Assignee:
                Unassigned
                Reporter:
                Jill Jill Jenkins (Inactive)
              • Votes:
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                Watchers:
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                Dates

                • Created:
                  Updated:
                  Resolved: