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  1. IGB
  2. IGBF-1523

Add vervet (green monkey) to IGB species.txt and synonyms.txt files

        Details

        • Story Points:
          0.25
        • Sprint:
          Spring 2019 Sprint 1, Spring 2019 Sprint 2, Spring 2019 Sprint 3

          Description

          Consult with Jill Jenkins on precise wording to use.

          We need to add green monkey to the species and synonyms files packaged with IGB. These files can also be distributed on a quickload site. Search Jira for examples of previously done updates.

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              Task - A task that needs to be done. IGBF-1401 Add Chlorocebus sabaeus ("green monkey") to IGB quickload

              • Major - Major loss of function.
              • Closed

                Activity

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                ann.loraine Ann Loraine created issue -
                ann.loraine Ann Loraine made changes -
                Field Original Value New Value
                Link This issue relates to IGBF-1401 [ IGBF-1401 ]
                svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
                Assignee Sai Charan Reddy Vallapureddy [ svallapu ]
                svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
                Assignee Sai Charan Reddy Vallapureddy [ svallapu ]
                Jill Jill Jenkins (Inactive) made changes -
                Status Open [ 1 ] In Progress [ 3 ]
                Jill Jill Jenkins (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
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                Jill Jill Jenkins (Inactive) added a comment -

                There are corresponding ens gene IDs for each ens transcript stable ID; however, not all ens gene IDs are showing in the tool tip. When I check them against the ensGene.bed14 file, they are present. I have re-executed the script and outcome is the same.

                Show
                Jill Jill Jenkins (Inactive) added a comment - There are corresponding ens gene IDs for each ens transcript stable ID; however, not all ens gene IDs are showing in the tool tip. When I check them against the ensGene.bed14 file, they are present. I have re-executed the script and outcome is the same.
                Jill Jill Jenkins (Inactive) made changes -
                Attachment Ens.py [ 14261 ]
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                Jill Jill Jenkins (Inactive) added a comment -

                I attached the Py3 script as well.

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                Jill Jill Jenkins (Inactive) added a comment - I attached the Py3 script as well.
                ptambvek Pranav Sanjay Tambvekar (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] Reviewing [ 10301 ]
                ptambvek Pranav Sanjay Tambvekar (Inactive) made changes -
                Assignee Pranav Sanjay Tambvekar [ ptambvek ]
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                ptambvek Pranav Sanjay Tambvekar (Inactive) added a comment -

                Jill Jenkins, Can you please add the link to the branch in your fork, where you have made the related changes, so that we can proceed to the first review?

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                ptambvek Pranav Sanjay Tambvekar (Inactive) added a comment - Jill Jenkins , Can you please add the link to the branch in your fork, where you have made the related changes, so that we can proceed to the first review?
                ptambvek Pranav Sanjay Tambvekar (Inactive) made changes -
                Assignee Pranav Sanjay Tambvekar [ ptambvek ] Jill Jenkins [ jill ]
                ptambvek Pranav Sanjay Tambvekar (Inactive) made changes -
                Status Reviewing [ 10301 ] Open [ 1 ]
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                Jill Jill Jenkins (Inactive) added a comment -

                I apologize, Pranav - this comment was for actually adding the green monkey genome to Dropbox.

                Show
                Jill Jill Jenkins (Inactive) added a comment - I apologize, Pranav - this comment was for actually adding the green monkey genome to Dropbox.
                ann.loraine Ann Loraine made changes -
                Sprint Spring 2019 Sprint 1 [ 59 ] Spring 2019 Sprint 1, Spring 2019 Sprint 2 [ 59, 60 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                Jill Jill Jenkins (Inactive) made changes -
                Status Open [ 1 ] Needs 1st Level Review [ 10005 ]
                Jill Jill Jenkins (Inactive) made changes -
                Assignee Jill Jenkins [ jill ]
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                Jill Jill Jenkins (Inactive) added a comment - - edited

                C.sabeus has been added to the Dropbox species.txt - review this for wording for IGB package species.txt and synonyms.txt.

                Show
                Jill Jill Jenkins (Inactive) added a comment - - edited C.sabeus has been added to the Dropbox species.txt - review this for wording for IGB package species.txt and synonyms.txt.
                ann.loraine Ann Loraine made changes -
                Sprint Spring 2019 Sprint 1, Spring 2019 Sprint 2 [ 59, 60 ] Spring 2019 Sprint 1, Spring 2019 Sprint 2, Spring 2019 Sprint 3 [ 59, 60, 61 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Resolution Done [ 10000 ]
                Status Needs 1st Level Review [ 10005 ] Closed [ 6 ]
                ann.loraine Ann Loraine made changes -
                Workflow Loraine Lab Workflow [ 18239 ] Fall 2019 Workflow Update [ 20015 ]
                ann.loraine Ann Loraine made changes -
                Workflow Fall 2019 Workflow Update [ 20015 ] Revised Fall 2019 Workflow Update [ 22142 ]

                  People

                  • Assignee:
                    Unassigned
                    Reporter:
                    ann.loraine Ann Loraine
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                    Dates

                    • Created:
                      Updated:
                      Resolved: