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  1. IGB
  2. IGBF-1632

IGB-CyVerse load data without genome

        Details

        • Type: New Feature
        • Status: Closed (View Workflow)
        • Priority: Blocker
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: The IGB-CyVerse bridge uses similar logic to BAR/Galaxy. However, CyVerse does not assume there is genome metadata associated with data.

          Task: Update code in IGB to allow for non-genome associated data from CyVerse.

          Important file: BookmarkUnibrowControlServlet.java
          Important method: loadUnknownData

          Note: Will need to make sure does not break the Galaxy/BAR logic.
          Note: At some point we need to refactor the servlet code used by Galaxy/BAR/CyVerse.

            Attachments

              Issue Links

              relates to

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-1635 Develop a strategy to refactor REST endpoint code used by Galaxy/BAR/CyVerse (maybe AppStore)

              • Major - Major loss of function.
              • Closed

                Activity

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                nfreese Nowlan Freese created issue -
                nfreese Nowlan Freese made changes -
                Field Original Value New Value
                Epic Link IGBF-1482 [ 17568 ]
                nfreese Nowlan Freese made changes -
                Status Open [ 1 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 2019 Sprint 3 [ 61 ] Spring 2019 Sprint 3, Spring 2019 Sprint 4 [ 61, 62 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                stiwari8 Srishti Tiwari (Inactive) made changes -
                Link This issue relates to IGBF-1635 [ IGBF-1635 ]
                stiwari8 Srishti Tiwari (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
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                stiwari8 Srishti Tiwari (Inactive) added a comment -

                Commit Url:
                https://bitbucket.org/srishtitiwari/integrated-genome-browser/commits/a42aa1ea6af02a0223d0afb42faa9189dcb6dbbd?at=IGBF-1632

                Show
                stiwari8 Srishti Tiwari (Inactive) added a comment - Commit Url: https://bitbucket.org/srishtitiwari/integrated-genome-browser/commits/a42aa1ea6af02a0223d0afb42faa9189dcb6dbbd?at=IGBF-1632
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] Ready for Pull Request [ 10304 ]
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                nfreese Nowlan Freese added a comment -

                1st level review complete.

                Show
                nfreese Nowlan Freese added a comment - 1st level review complete.
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                stiwari8 Srishti Tiwari (Inactive) added a comment -

                Pull request submitted:

                https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/680/igbf-1632-added-changes-to-handle-cyverse/diff

                Show
                stiwari8 Srishti Tiwari (Inactive) added a comment - Pull request submitted: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/680/igbf-1632-added-changes-to-handle-cyverse/diff
                stiwari8 Srishti Tiwari (Inactive) made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                stiwari8 Srishti Tiwari (Inactive) made changes -
                Assignee Srishti Tiwari [ stiwari8 ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Assignee Srishti Tiwari [ stiwari8 ]
                nfreese Nowlan Freese made changes -
                Resolution Done [ 10000 ]
                Status Needs Testing [ 10002 ] Closed [ 6 ]
                ann.loraine Ann Loraine made changes -
                Workflow Loraine Lab Workflow [ 18353 ] Fall 2019 Workflow Update [ 20082 ]
                ann.loraine Ann Loraine made changes -
                Workflow Fall 2019 Workflow Update [ 20082 ] Revised Fall 2019 Workflow Update [ 22216 ]

                  People

                  • Assignee:
                    stiwari8 Srishti Tiwari (Inactive)
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
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                    Dates

                    • Created:
                      Updated:
                      Resolved: