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  1. IGB
  2. IGBF-1654

Make index files public automatically

        Details

        • Type: Improvement
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: BAM and .gz files require an index (.bam or .tbi) to view in IGB. Currently, within our BioViz-CyVerse implementation, the user has to manually make the index public in order to view.

          Task: Make it so that if a user makes a file public, and that file has an index, the index is automatically also made public at the same time. If the file is made private, the index is then also made private automatically at the same time. This should apply to .bai and .tbi indexes.

            Attachments

            1. Private.PNG
              Private.PNG
              15 kB
            2. GZ Example.PNG
              GZ Example.PNG
              32 kB
            3. Create Public.PNG
              Create Public.PNG
              21 kB
            4. Bam File Example.PNG
              Bam File Example.PNG
              15 kB

              Issue Links

              is blocked by

              New Feature - A new feature of the product, which has yet to be developed. IGBF-3185 Implement index files made public with respective bam file

              • Major - Major loss of function.
              • To-Do

                Activity

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                Permalink
                sameer Sameer Shanbhag (Inactive) added a comment -

                Tested for all the Files.

                Works fine. Added Screenshots for the Output.

                Can be moved to completed.

                Show
                sameer Sameer Shanbhag (Inactive) added a comment - Tested for all the Files. Works fine. Added Screenshots for the Output. Can be moved to completed.
                Hide
                Permalink
                karthik Karthik Raveendran added a comment -

                After creating/removing the public link for the index file, user is notified in the Manage Link dialog box itself instead of an alert

                Show
                karthik Karthik Raveendran added a comment - After creating/removing the public link for the index file, user is notified in the Manage Link dialog box itself instead of an alert
                Hide
                Permalink
                karthik Karthik Raveendran added a comment - - edited

                I have implemented the better version of this improvement.

                Show
                karthik Karthik Raveendran added a comment - - edited I have implemented the better version of this improvement.
                Hide
                Permalink
                nfreese Nowlan Freese added a comment -

                Merged. Moved back to In Progress, as Karthik said he wanted to try a potentially better implementation.

                Show
                nfreese Nowlan Freese added a comment - Merged. Moved back to In Progress, as Karthik said he wanted to try a potentially better implementation.

                  People

                  • Assignee:
                    karthik Karthik Raveendran
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
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                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: