Details
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Type:
Improvement
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Sprint:Spring 2019 Sprint 4, Spring 2019 Sprint 5, Spring 2019 Sprint 6, Summer 2019 Sprint 7
Description
Situation: BAM and .gz files require an index (.bam or .tbi) to view in IGB. Currently, within our BioViz-CyVerse implementation, the user has to manually make the index public in order to view.
Task: Make it so that if a user makes a file public, and that file has an index, the index is automatically also made public at the same time. If the file is made private, the index is then also made private automatically at the same time. This should apply to .bai and .tbi indexes.
Attachments
Issue Links
- is blocked by
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IGBF-3185 Implement index files made public with respective bam file
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- To-Do
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link |
|
| Status | Open [ 1 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
I have implemented the better version of this improvement.
| Status | Needs 1st Level Review [ 10005 ] | In Progress [ 3 ] |
| Sprint | Spring 2019 Sprint 4 [ 62 ] | Spring 2019 Sprint 4, Spring 2019 Sprint 5 [ 62, 63 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Karthik Raveendran [ karthik ] |
After creating/removing the public link for the index file, user is notified in the Manage Link dialog box itself instead of an alert
| Status | Needs 1st Level Review [ 10005 ] | Needs Testing [ 10002 ] |
| Sprint | Spring 2019 Sprint 4, Spring 2019 Sprint 5 [ 62, 63 ] | Spring 2019 Sprint 4, Spring 2019 Sprint 5, Spring 2019 Sprint 6 [ 62, 63, 64 ] |
| Rank | Ranked higher |
| Sprint | Spring 2019 Sprint 4, Spring 2019 Sprint 5, Spring 2019 Sprint 6 [ 62, 63, 64 ] | Spring 2019 Sprint 4, Spring 2019 Sprint 5, Spring 2019 Sprint 6, Summer 2019 Sprint 7 [ 62, 63, 64, 66 ] |
| Rank | Ranked higher |
| Rank | Ranked lower |
| Assignee | Sameer Shanbhag [ sameer ] |
| Status | Needs Testing [ 10002 ] | Testing In Progress [ 10003 ] |
| Attachment | Create Public.PNG [ 14311 ] | |
| Attachment | Private.PNG [ 14312 ] |
| Attachment | GZ Example.PNG [ 14313 ] | |
| Attachment | Bam File Example.PNG [ 14314 ] |
Tested for all the Files.
Works fine. Added Screenshots for the Output.
Can be moved to completed.
| Assignee | Sameer Shanbhag [ sameer ] | Karthik Raveendran [ karthik ] |
| Resolution | Done [ 10000 ] | |
| Status | Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Workflow | Loraine Lab Workflow [ 18375 ] | Fall 2019 Workflow Update [ 20102 ] |
| Workflow | Fall 2019 Workflow Update [ 20102 ] | Revised Fall 2019 Workflow Update [ 22236 ] |
Merged. Moved back to In Progress, as Karthik said he wanted to try a potentially better implementation.