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  1. IGB
  2. IGBF-1759

Remove galaxy directory from project

        Details

        • Type: Improvement
        • Status: Closed (View Workflow)
        • Priority: Minor
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          There is a directory named "galaxy" at the top level of the integrated-genome-browser repository.

          This code is already version-controlled within the Galaxy code base.
          Find the same files in the Galaxy code base and compare our version to their version. Make a note of any discrepancies.

          If it looks like the Galaxy versions are the most up-to-date and correct, remove the files from our repository.

          Otherwise, make a note of it here.

          Tip: Search for string "galaxy" in Jira to understand the connection between IGB and the Galaxy system.

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              4 older comments
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              ann.loraine Ann Loraine added a comment -

              repeated, same error.

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              ann.loraine Ann Loraine added a comment - repeated, same error.
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              ann.loraine Ann Loraine added a comment -

              Works. I opened a new Terminal and tried to execute run.sh. This time, everything downloaded and Galaxy started up.

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              ann.loraine Ann Loraine added a comment - Works. I opened a new Terminal and tried to execute run.sh. This time, everything downloaded and Galaxy started up.
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              ann.loraine Ann Loraine added a comment -

              I have reviewed the .xml files in the IGB project and in https://github.com/galaxyproject/galaxy/blob/dev/display_applications/igb
              The files in the Galaxy repository are the most up-to-date.
              I am removing the galaxy directory in the IGB project.

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              ann.loraine Ann Loraine added a comment - I have reviewed the .xml files in the IGB project and in https://github.com/galaxyproject/galaxy/blob/dev/display_applications/igb The files in the Galaxy repository are the most up-to-date. I am removing the galaxy directory in the IGB project.
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              ann.loraine Ann Loraine added a comment -

              Removed galaxy directory. Project builds and tests successfully finish without this. Changes are on branch:
              https://bitbucket.org/aloraine/alorainefork/branch/IGBF-1759

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              ann.loraine Ann Loraine added a comment - Removed galaxy directory. Project builds and tests successfully finish without this. Changes are on branch: https://bitbucket.org/aloraine/alorainefork/branch/IGBF-1759
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              ann.loraine Ann Loraine added a comment -

              Merged to master.

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              ann.loraine Ann Loraine added a comment - Merged to master.

                People

                • Assignee:
                  ann.loraine Ann Loraine
                  Reporter:
                  ann.loraine Ann Loraine
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                  Dates

                  • Created:
                    Updated:
                    Resolved: