Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 9.1.0 Major Release
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Labels:
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Story Points:2
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Epic Link:
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Sprint:Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2
Description
I am creating a Quickload site for a colleague in which I'm distributing some bigwig (.bw) files.
I am able to open these files into IGB in the usual way. When I do that, the file appears in the Data Management table with the expected data set name. Everything works great!
However, once I click "Load Data", the data set name changes to the name of the file, minus the ".bw" file extension.
This is a very strange bug! Please investigate.
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Activity
I love it. One line, big effect!
Nowlan Freese could you do functional review on this?
If no functional issues are detected, Noor Zahara please rebase on the latest master and submit PR. I will try to merge it ASAP.
Working correctly, the name stays as the name (and does not change to the file name) once the data is loaded.
Noor Zahara, I have tested the functionality and it is working as expected.
Now, the track name is not changing post "Load Data" click as the feature name is changed to "uri.toString()" in private List<? extends SeqSymmetry> parse(BioSeq seq, BigWigIterator wigIterator) function of the "BigWigSymLoader.java" file.
Moving the ticket to DONE.
Testing Steps
Load a bigWig file (File > Open File) -> Click on Load Data button (present on right topmost corner of the IGB screen) -> observe the track name in Data Management Table> It should be displayed with the extension i.e. ".bw"
For your reference, here is a link to the commit after PR above was merged:
public class BigWigSymLoader has a method named parse where we are setting gid (graph name).
It is set as file name without the extension and hence the extension disappears.
Note : Before the data is loaded the style is set with filename with extension and once data is loaded, it is overriden by filename without extension.