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  1. IGB
  2. IGBF-1977

Remove unneeded logging and println statements from tests

    Details

    • Type: Improvement
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:

      Description

      Many of IGB's test cases are printing unnecessary stuff to console.

      This is unnecessary. If a test fails, we will notice. If it passes, we don't want to hear about it.

      Here is an example of gratuitous printing of stuff to the console:

      -------------------------------------------------------
      T E S T S
      -------------------------------------------------------
      Running apollo.analysis.RemoteBlastNCBITest
      GAAGTTTCCTTATCATCATTAATCATGCCTATGAAAACCCTAACCGGCCT
      https://blast.ncbi.nlm.nih.gov/Blast.cgi?RID=NJHUT165015&CMD=Get
      RID=NJHUT165015
      GAAGTTTCCTTATCATCATTAATCATGCCTATGAAAACCCTAACCGGCCTACATATTTGCAGTCTCTTTTAGGTCAGGAATCTAATGAGAATGAATTATTTTATTTTATTTAACAATAATTGGAGCATGTCATTAATTCTCTTTATTCTTCTTACACAACTAATCATTTAGATGTGTTACAATATTATTTCCTTTAGTCATTTTCATAATTTTAATACCTCCGTACTTTTCACTAATACCTCCCCTTTTAATTTTCATTATTTCTTCTTTTCTATCAGTCTATGCATGCATTCTTTTGAATATTAAAATGCATTTTATATTCTTTTGACAACTATGCACAAGCCTTTTGAGACACATCTACACAATATAATAGCACAAGCCTTTATGAGACATATCTACACAATATCATTGCTACTTGTAGACTATTTGGAATACGTATTTACATATTCCATTGTATCATCCCTTTGCAAATGTTTTATACATATAACTAACATATACATTATTCGTAACTTTGTTCCCCTATATCGAAAAATGTGGGCTACACATATAACTAACATATATATATATATGTATGTTTATATGATATAGTCTCCATGTCTATATATCTTATATATTACATGTTTCATGTTTACGGTCAAGGGAGTATTTTTATACGCATACACAATCATACACACTTAACCCTACTTATAATGATGTAGGTTCATATATTTATCTTATTTTAGGATCATTCGATCACAAATTATACGGACCCTCATACTCTCTAAAGATATACAAAATCCGCTATGTCATATCCGATCCGAATTAGCAGCTAAAGAAAAACAAACACATGCATCTACTGAAGATTTGAGTCTCGAGTGCTTAGTTACATGAACTATCACAAAGGATATGGATAATATAAGGTGTACTGAAGTATGTCTATGCAATGGGAGGGAAATACATTCTGTTAAATGACTTGTCGATTTGATCTTTCATGCCAAAGATTAAAAATTTAACACTTAATTAACGCAATCTTACCATATATTCATGGACTACATGCAGAATAGTAATTCTCCCAACCTTTCTAGTTATTTACCTGAATGTGTTTATGTACATGGACCGGTAACCTCATGTATATATGCACATACTGACAATCTGACATACATATATATAGTAGATATGACAACAACAACAAAAAAAAAAAAAATTCCTTGTTCGTGAAGCATGATCTGAGAGTTCCTAGTTAGCATGTTGTGTGGGATCATACTTTTAATATGCTGCAAGTACCAGTCAATTTTAGTATGGGAAACTATAAACATGTATAATCAACCAATGAACACGTCAATAACCTATTGAACAGCTTAGGGTGAAAATTATGATCCGTAGAGACAGCATTTAAAAGTTCCTTACGTCCACGTAAAATAATATATCAATTTATACATATACATGTGTAAACTGTGTATATATAGGGTAGGTATATGTGTATATATATAGTAATTGACAAATGATTTAGGTTCTAACATATATTCTAAAAGTACTCATGAGTTTGTGAGATCTACACAAGATACCTGATTTGATAAAAATGGCTTCAACTTGCAATCCAAACCAAACCAAACAAAGTTAATAACCAAGGGTTAATAACAAAAACAAGAATCTAGAATTAGTAAAAAAATGAGAAATTAATGAACCTGTGATCATAAAAAAAGTCAAACAATGTGAAAACATATCATACCTTTTGTTCTTTTTAATATAATAATTGAATTACTAAATGGATGGATCAGTCCTTCTTCCATAGCTAGCTTCTCTTTATTTTCTCTGCCCATAACCTGCAGAAAATCTCTTTAACCGAGCAAAATTACAAGAGTAACCAAACAAACAAAATAGGACCATCAGAGAGAGAGAAAAGAGTGCCTTTTTTTGGACCTGCCCATTAGCTTAGAATGTACCATGAAACACTTTGTCAGTGTAGGGAGATAGGCACAGAGAGTACAATTCATGAAATTTATAAGCTTTTTTCCCACTCATCAATT
      https://blast.ncbi.nlm.nih.gov/Blast.cgi?RID=NJHUWRD7015&CMD=Get
      RID=NJHUWRD7015
      Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 8.481 sec - in apollo.analysis.RemoteBlastNCBITest

      For this task, please inspect the testing code and remove println and logging statements.

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            ann.loraine Ann Loraine created issue -
            ann.loraine Ann Loraine made changes -
            Field Original Value New Value
            Epic Link IGBF-1765 [ 17855 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
            Assignee Sai Charan Reddy Vallapureddy [ svallapu ]
            svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
            Status Open [ 1 ] In Progress [ 3 ]
            svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
            Assignee Sai Charan Reddy Vallapureddy [ svallapu ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] Open [ 1 ]
            ann.loraine Ann Loraine made changes -
            Assignee Sai Charan Reddy Vallapureddy [ svallapu ]
            svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
            Link This issue relates to IGBF-1981 [ IGBF-1981 ]
            svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
            Status Open [ 1 ] Pull Request Submitted [ 10101 ]
            svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
            Assignee Sai Charan Reddy Vallapureddy [ svallapu ]
            ann.loraine Ann Loraine made changes -
            Workflow Loraine Lab Workflow [ 18701 ] Fall 2019 Workflow Update [ 19057 ]
            ann.loraine Ann Loraine made changes -
            Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
            ann.loraine Ann Loraine made changes -
            Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
            noor91zahara Noor Zahara (Inactive) made changes -
            Assignee Noor Zahara [ noor91zahara ]
            noor91zahara Noor Zahara (Inactive) made changes -
            Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
            noor91zahara Noor Zahara (Inactive) made changes -
            Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
            noor91zahara Noor Zahara (Inactive) made changes -
            Assignee Noor Zahara [ noor91zahara ] Sai Charan Reddy Vallapureddy [ svallapu ]
            ann.loraine Ann Loraine made changes -
            Epic Link IGBF-1765 [ 17855 ] IGBF-1531 [ 17617 ]
            ann.loraine Ann Loraine made changes -
            Summary Remove loggin and println statements from tests Remove unneeded logging and println statements from tests
            ann.loraine Ann Loraine made changes -
            Workflow Fall 2019 Workflow Update [ 19057 ] Revised Fall 2019 Workflow Update [ 22488 ]
            ann.loraine Ann Loraine made changes -
            Status Closed [ 6 ] To-Do [ 10305 ]
            ann.loraine Ann Loraine made changes -
            Assignee Sai Charan Reddy Vallapureddy [ svallapu ] Ann Loraine [ aloraine ]
            ann.loraine Ann Loraine made changes -
            Comment [ Merged to master. ]
            ann.loraine Ann Loraine made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            ann.loraine Ann Loraine made changes -
            Fix Version/s 9.1.0 Major Release [ 10601 ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ]
            ann.loraine Ann Loraine made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
            ann.loraine Ann Loraine made changes -
            Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
            ann.loraine Ann Loraine made changes -
            Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
            ann.loraine Ann Loraine made changes -
            Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
            ann.loraine Ann Loraine made changes -
            Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
            ann.loraine Ann Loraine made changes -
            Resolution Done [ 10000 ]
            Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ]

              People

              • Assignee:
                ann.loraine Ann Loraine
                Reporter:
                ann.loraine Ann Loraine
              • Votes:
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                Dates

                • Created:
                  Updated:
                  Resolved: