Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-1977

Remove unneeded logging and println statements from tests

    Details

    • Type: Improvement
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:

      Description

      Many of IGB's test cases are printing unnecessary stuff to console.

      This is unnecessary. If a test fails, we will notice. If it passes, we don't want to hear about it.

      Here is an example of gratuitous printing of stuff to the console:

      -------------------------------------------------------
      T E S T S
      -------------------------------------------------------
      Running apollo.analysis.RemoteBlastNCBITest
      GAAGTTTCCTTATCATCATTAATCATGCCTATGAAAACCCTAACCGGCCT
      https://blast.ncbi.nlm.nih.gov/Blast.cgi?RID=NJHUT165015&CMD=Get
      RID=NJHUT165015
      GAAGTTTCCTTATCATCATTAATCATGCCTATGAAAACCCTAACCGGCCTACATATTTGCAGTCTCTTTTAGGTCAGGAATCTAATGAGAATGAATTATTTTATTTTATTTAACAATAATTGGAGCATGTCATTAATTCTCTTTATTCTTCTTACACAACTAATCATTTAGATGTGTTACAATATTATTTCCTTTAGTCATTTTCATAATTTTAATACCTCCGTACTTTTCACTAATACCTCCCCTTTTAATTTTCATTATTTCTTCTTTTCTATCAGTCTATGCATGCATTCTTTTGAATATTAAAATGCATTTTATATTCTTTTGACAACTATGCACAAGCCTTTTGAGACACATCTACACAATATAATAGCACAAGCCTTTATGAGACATATCTACACAATATCATTGCTACTTGTAGACTATTTGGAATACGTATTTACATATTCCATTGTATCATCCCTTTGCAAATGTTTTATACATATAACTAACATATACATTATTCGTAACTTTGTTCCCCTATATCGAAAAATGTGGGCTACACATATAACTAACATATATATATATATGTATGTTTATATGATATAGTCTCCATGTCTATATATCTTATATATTACATGTTTCATGTTTACGGTCAAGGGAGTATTTTTATACGCATACACAATCATACACACTTAACCCTACTTATAATGATGTAGGTTCATATATTTATCTTATTTTAGGATCATTCGATCACAAATTATACGGACCCTCATACTCTCTAAAGATATACAAAATCCGCTATGTCATATCCGATCCGAATTAGCAGCTAAAGAAAAACAAACACATGCATCTACTGAAGATTTGAGTCTCGAGTGCTTAGTTACATGAACTATCACAAAGGATATGGATAATATAAGGTGTACTGAAGTATGTCTATGCAATGGGAGGGAAATACATTCTGTTAAATGACTTGTCGATTTGATCTTTCATGCCAAAGATTAAAAATTTAACACTTAATTAACGCAATCTTACCATATATTCATGGACTACATGCAGAATAGTAATTCTCCCAACCTTTCTAGTTATTTACCTGAATGTGTTTATGTACATGGACCGGTAACCTCATGTATATATGCACATACTGACAATCTGACATACATATATATAGTAGATATGACAACAACAACAAAAAAAAAAAAAATTCCTTGTTCGTGAAGCATGATCTGAGAGTTCCTAGTTAGCATGTTGTGTGGGATCATACTTTTAATATGCTGCAAGTACCAGTCAATTTTAGTATGGGAAACTATAAACATGTATAATCAACCAATGAACACGTCAATAACCTATTGAACAGCTTAGGGTGAAAATTATGATCCGTAGAGACAGCATTTAAAAGTTCCTTACGTCCACGTAAAATAATATATCAATTTATACATATACATGTGTAAACTGTGTATATATAGGGTAGGTATATGTGTATATATATAGTAATTGACAAATGATTTAGGTTCTAACATATATTCTAAAAGTACTCATGAGTTTGTGAGATCTACACAAGATACCTGATTTGATAAAAATGGCTTCAACTTGCAATCCAAACCAAACCAAACAAAGTTAATAACCAAGGGTTAATAACAAAAACAAGAATCTAGAATTAGTAAAAAAATGAGAAATTAATGAACCTGTGATCATAAAAAAAGTCAAACAATGTGAAAACATATCATACCTTTTGTTCTTTTTAATATAATAATTGAATTACTAAATGGATGGATCAGTCCTTCTTCCATAGCTAGCTTCTCTTTATTTTCTCTGCCCATAACCTGCAGAAAATCTCTTTAACCGAGCAAAATTACAAGAGTAACCAAACAAACAAAATAGGACCATCAGAGAGAGAGAAAAGAGTGCCTTTTTTTGGACCTGCCCATTAGCTTAGAATGTACCATGAAACACTTTGTCAGTGTAGGGAGATAGGCACAGAGAGTACAATTCATGAAATTTATAAGCTTTTTTCCCACTCATCAATT
      https://blast.ncbi.nlm.nih.gov/Blast.cgi?RID=NJHUWRD7015&CMD=Get
      RID=NJHUWRD7015
      Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 8.481 sec - in apollo.analysis.RemoteBlastNCBITest

      For this task, please inspect the testing code and remove println and logging statements.

        Attachments

          Issue Links

            Activity

            No work has yet been logged on this issue.

              People

              • Assignee:
                ann.loraine Ann Loraine
                Reporter:
                ann.loraine Ann Loraine
              • Votes:
                0 Vote for this issue
                Watchers:
                3 Start watching this issue

                Dates

                • Created:
                  Updated:
                  Resolved: