Details
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Type:
Improvement
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Status: Closed (View Workflow)
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Priority:
Minor
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:1
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Epic Link:
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Sprint:Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep, Fall 1: 14 Sep - 25 Sep, Fall 2: 28 Sep - 9 Oct
Description
The IGB project contains a dependency on a library from Affymetrix that they are no longer supporting. We have copy of the jar file for this library in one of our legacy maven repositories. We would like to retire that repository but make sure IGB can still build and function.
For this task, lets remove the affymetrix "fusion" library and the "jlfgr" library.
To begin, let's try to remove dependencies such as com.affymetrix:fusion that are not needed anymore.
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Summary | Remove dependency com.affymetrix:fusion and also the files using dependency from IGB codebase | Remove dependencies - com.affymetrix:fusion, javax.jlfgr:jlfgr and also the files using those from IGB codebase |
| Workflow | Loraine Lab Workflow [ 18710 ] | Fall 2019 Workflow Update [ 19029 ] |
| Link | This issue is cloned by IGBF-1987 [ IGBF-1987 ] |
| Parent |
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| Issue Type | Sub-task [ 5 ] | Improvement [ 4 ] |
| Epic Link | IGBF-1531 [ 17617 ] |
| Workflow | Fall 2019 Workflow Update [ 19029 ] | Revised Fall 2019 Workflow Update [ 21126 ] |
| Status | Open [ 1 ] | To-Do [ 10305 ] |
| Fix Version/s | 9.1.0 Major Release [ 10601 ] |
| Assignee | Prutha Kulkarni [ prutha ] | Ann Loraine [ aloraine ] |
| Assignee | Ann Loraine [ aloraine ] |
| Sprint | Summer 4: 14 Jul - 28 Jul [ 99 ] |
| Story Points | 0.25 | 1 |
| Description |
The IGB project contains a dependency on a library from Affymetrix that they are no longer supporting. We have copy of the jar file for this library in one of our legacy maven repositories. We would like to retire that repository and also stop using libraries that are not supported by their respective vendors.
For this task, lets remove the affymetrix "fusion" library and the "jlfgr" library. |
| Rank | Ranked higher |
| Assignee | Jay Chamma [ gchamma ] |
| Sprint | Summer 4: 14 Jul - 28 Jul [ 99 ] | Summer 3: 6 Jul - 17 Jul [ 98 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Jay Chamma [ gchamma ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Ann Loraine [ aloraine ] | Jay Chamma [ gchamma ] |
| Sprint | Summer 3: 6 Jul - 17 Jul [ 98 ] | Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul [ 98, 99 ] |
| Rank | Ranked higher |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Jay Chamma [ gchamma ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Status | Post-merge Testing In Progress [ 10003 ] | To-Do [ 10305 ] |
| Rank | Ranked higher |
| Comment |
[ [~aloraine] I found the first ten questions easy, and the remaining two questions were really interesting. Especially the 11th question was a bit tricky since there are two ways to do that. Maybe we can break the quiz into two parts. The first one will have 1-10 questions and a second quiz covering some advanced topics like 11th and12th questions, squashing the commits, cherry-pick, git commit standard that we follow, etc.
] |
| Assignee | Chirag Chandrahas Shetty [ chirag24 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Chirag Chandrahas Shetty [ chirag24 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Assignee | Chirag Chandrahas Shetty [ chirag24 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Chirag Chandrahas Shetty [ chirag24 ] |
| Assignee | Shamika Gajanan Kulkarni [ shamika ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Assignee | Shamika Gajanan Kulkarni [ shamika ] |
| Assignee | Shamika Gajanan Kulkarni [ shamika ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Assignee | Shamika Gajanan Kulkarni [ shamika ] |
| Sprint | Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul [ 98, 99 ] | Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul, Summer 5: 29 Jul - 12 Aug [ 98, 99, 100 ] |
| Rank | Ranked higher |
| Sprint | Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug [ 98, 99, 100 ] | Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug [ 98, 99, 100, 101 ] |
| Rank | Ranked higher |
| Sprint | Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug [ 98, 99, 100, 101 ] | Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep [ 98, 99, 100, 101, 102 ] |
| Rank | Ranked higher |
| Sprint | Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep [ 98, 99, 100, 101, 102 ] | Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep, Fall 1: 14 Sep - 25 Sep [ 98, 99, 100, 101, 102, 103 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Assignee | Sai Supreeth Segu [ ssegu ] |
| Attachment | Jidesoft_error.png [ 14879 ] |
| Sprint | Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep, Fall 1: 14 Sep - 25 Sep [ 98, 99, 100, 101, 102, 103 ] | Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep, Fall 1: 14 Sep - 25 Sep, Fall 2: 28 Sep - 9 Oct [ 98, 99, 100, 101, 102, 103, 104 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Comment | [ Let's use bioviz.org as the domain. Can we do that? ] |
| Comment | [ Never mind -- lorainelab.org is fine!! ] |
| Attachment | jflow-mvn.zip [ 14890 ] | |
| Attachment | jflow-2.0.jar [ 14891 ] |
| Attachment | jflow-new.zip [ 14892 ] | |
| Attachment | jflow-3.0.jar [ 14893 ] |
| Labels | Beginner | Advanced Beginner |
| Description |
The IGB project contains a dependency on a library from Affymetrix that they are no longer supporting. We have copy of the jar file for this library in one of our legacy maven repositories. We would like to retire that repository and also stop using libraries that are not supported by their respective vendors.
For this task, lets remove the affymetrix "fusion" library and the "jlfgr" library. |
The IGB project contains a dependency on a library from Affymetrix that they are no longer supporting. We have copy of the jar file for this library in one of our legacy maven repositories. We would like to retire that repository and also stop using libraries that are not supported by their respective vendors.
For this task, lets remove the affymetrix "fusion" library and the "jlfgr" library. We should remove dependencies - com.affymetrix:fusion, javax.jlfgr:jlfgr and also the files using those from IGB codebase. |
| Description |
The IGB project contains a dependency on a library from Affymetrix that they are no longer supporting. We have copy of the jar file for this library in one of our legacy maven repositories. We would like to retire that repository and also stop using libraries that are not supported by their respective vendors.
For this task, lets remove the affymetrix "fusion" library and the "jlfgr" library. We should remove dependencies - com.affymetrix:fusion, javax.jlfgr:jlfgr and also the files using those from IGB codebase. |
The IGB project contains a dependency on a library from Affymetrix that they are no longer supporting. We have copy of the jar file for this library in one of our legacy maven repositories. We would like to retire that repository and also stop using libraries that are not supported by their respective vendors.
For this task, lets remove the affymetrix "fusion" library and the "jlfgr" library. Let's remove dependencies such as com.affymetrix:fusion that are not needed anymore. |
| Description |
The IGB project contains a dependency on a library from Affymetrix that they are no longer supporting. We have copy of the jar file for this library in one of our legacy maven repositories. We would like to retire that repository and also stop using libraries that are not supported by their respective vendors.
For this task, lets remove the affymetrix "fusion" library and the "jlfgr" library. Let's remove dependencies such as com.affymetrix:fusion that are not needed anymore. |
The IGB project contains a dependency on a library from Affymetrix that they are no longer supporting. We have copy of the jar file for this library in one of our legacy maven repositories. We would like to retire that repository but make sure IGB can still build and function.
For this task, lets remove the affymetrix "fusion" library and the "jlfgr" library. Let's remove dependencies such as com.affymetrix:fusion that are not needed anymore. |
| Summary | Remove dependencies - com.affymetrix:fusion, javax.jlfgr:jlfgr and also the files using those from IGB codebase | Start using maven central to release IGB components |
| Description |
The IGB project contains a dependency on a library from Affymetrix that they are no longer supporting. We have copy of the jar file for this library in one of our legacy maven repositories. We would like to retire that repository but make sure IGB can still build and function.
For this task, lets remove the affymetrix "fusion" library and the "jlfgr" library. Let's remove dependencies such as com.affymetrix:fusion that are not needed anymore. |
The IGB project contains a dependency on a library from Affymetrix that they are no longer supporting. We have copy of the jar file for this library in one of our legacy maven repositories. We would like to retire that repository but make sure IGB can still build and function.
For this task, lets remove the affymetrix "fusion" library and the "jlfgr" library. To begin, let's try to remove dependencies such as com.affymetrix:fusion that are not needed anymore. |
| Summary | Start using maven central to release IGB components | Clean up and streamline dependencies |
| Assignee | Sai Supreeth Segu [ ssegu ] | Ann Loraine [ aloraine ] |
| Summary | Clean up and streamline dependencies | Clean up and streamline dependencies, deploy to maven central |
| Sprint | Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep, Fall 1: 14 Sep - 25 Sep, Fall 2: 28 Sep - 9 Oct [ 98, 99, 100, 101, 102, 103, 104 ] | Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep, Fall 1: 14 Sep - 25 Sep, Fall 2: 28 Sep - 9 Oct, Fall 3: Oct 12 - Oct 23 [ 98, 99, 100, 101, 102, 103, 104, 106 ] |
| Rank | Ranked higher |
| Assignee | Ann Loraine [ aloraine ] | Sai Supreeth Segu [ ssegu ] |
| Assignee | Sai Supreeth Segu [ ssegu ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Sprint | Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep, Fall 1: 14 Sep - 25 Sep, Fall 2: 28 Sep - 9 Oct, Fall 3: Oct 12 - Oct 23 [ 98, 99, 100, 101, 102, 103, 104, 106 ] | Summer 3: 6 Jul - 17 Jul, Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep, Fall 1: 14 Sep - 25 Sep, Fall 2: 28 Sep - 9 Oct [ 98, 99, 100, 101, 102, 103, 104 ] |
| Rank | Ranked higher |
| Labels | Advanced Beginner | Advanced |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |