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  1. IGB
  2. IGBF-199

Check that instructions for building FindJunctions (in tools directory) still work

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Fixed
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Check that a new user can easily check out, build, and run FindJunctions.

          • Follow instructions on bitbucket to clone the repo onto local computer
          • Read the README or other documentation in tools/FindJunctions
          • Follow the instructions to build and run FindJunctions

          Note: I couldn't find instructions on how to run the software. Probably we need to add this. Look on wiki and SourceForge to find instructions. If none are available, look carefully at the code to determine parameters, arguments, command line syntax, etc.

          For your reference, here is a simple script Ann uses to run FindJunctions on the cluster:

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              ann.loraine Ann Loraine created issue -
              ann.loraine Ann Loraine made changes -
              Field Original Value New Value
              Epic Link IGBF-99 [ 14534 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Story Points 0.5
              dcnorris David Norris (Inactive) made changes -
              Sprint Sprint 5 [ 10 ]
              dcnorris David Norris (Inactive) made changes -
              Rank Ranked higher
              tkanapar Tarun Santosh (Inactive) made changes -
              Status Open [ 1 ] In Progress [ 3 ]
              tkanapar Tarun Santosh (Inactive) made changes -
              Status In Progress [ 3 ] Open [ 1 ]
              tkanapar Tarun Santosh (Inactive) made changes -
              Status Open [ 1 ] In Progress [ 3 ]
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              tkanapar Tarun Santosh (Inactive) added a comment -

              https://wiki.transvar.org/display/igbman/FindJunctions

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              tkanapar Tarun Santosh (Inactive) added a comment - https://wiki.transvar.org/display/igbman/FindJunctions
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              tkanapar Tarun Santosh (Inactive) added a comment -

              The FindJunction feature has to be worked on and the documentation has to be updated.
              The following issues have been created to address it.
              IGBF-230
              IGBF-231

              Show
              tkanapar Tarun Santosh (Inactive) added a comment - The FindJunction feature has to be worked on and the documentation has to be updated. The following issues have been created to address it. IGBF-230 IGBF-231
              tkanapar Tarun Santosh (Inactive) made changes -
              Status In Progress [ 3 ] Closed [ 6 ]
              Resolution Fixed [ 1 ]
              ann.loraine Ann Loraine made changes -
              Workflow Loraine Lab Workflow [ 14923 ] Fall 2019 Workflow Update [ 19221 ]
              ann.loraine Ann Loraine made changes -
              Workflow Fall 2019 Workflow Update [ 19221 ] Revised Fall 2019 Workflow Update [ 21337 ]

                People

                • Assignee:
                  tkanapar Tarun Santosh (Inactive)
                  Reporter:
                  ann.loraine Ann Loraine
                • Votes:
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                  Dates

                  • Created:
                    Updated:
                    Resolved: