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  1. IGB
  2. IGBF-2010

Investigate why Merge Annotation Operator is failing to add itself to Operations Menu

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:

      Description

      Investigate and propose a fix for the following.

      The IGB App "Merge Annotation Operation" is currently failing with IGB 9.1.0, even though it can be installed. The problem may be due to a change in the API or possibly an OSGi wiring issue.

      The bug:

      You execute the usual workflow to install the App to IGB 9.1.0. However, when you try to find the App's menu item under Annotations tab > Multi-Track Operations, it is not there.

      To reproduce:

      1) Launch IGB 9.1.0
      2) Select Arabidopsis genome (click flower picture next to the Mona Lisa)
      3) Observe Araport track loads (this is an annotations track)
      4) Open another annotations track by selecting its checkbox in the Available Data Sets section (TAIR10 is fine)
      5) Load some data for the new track by clicking "Load Data" button or by choosing "Genome" in the Load Mode menu in the Data Management Table.
      6) Select Annotations Tab
      7) Click "Select All"
      8) Now check the Operations menus. If you have installed Merge Annotations Operator, there should be an option "Merge" in this menu.

      To install the App:

      1) Go to https://bitbucket.org/lorainelab/merge-annotation-operator/src/master/
      2) Click Downloads link
      3) Copy URL
      4) Add this repository as a new App repository in IGB
      5) Install the App (it should appear as a new App in the App Manager)

        Attachments

          Activity

          aloraine Ann Loraine created issue -
          aloraine Ann Loraine made changes -
          Field Original Value New Value
          Epic Link IGBF-1388 [ 17463 ]
          aloraine Ann Loraine made changes -
          Rank Ranked higher
          aloraine Ann Loraine made changes -
          Assignee Ann Loraine [ aloraine ]
          aloraine Ann Loraine made changes -
          Sprint Fall 2019 Sprint 4 [ 75 ] Fall 2019 Sprint 3 [ 74 ]
          aloraine Ann Loraine made changes -
          Rank Ranked higher
          aloraine Ann Loraine made changes -
          Assignee Prutha Kulkarni [ prutha ]
          prutha Prutha Kulkarni (Inactive) made changes -
          Status Open [ 1 ] To-Do [ 10305 ]
          prutha Prutha Kulkarni (Inactive) made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          prutha Prutha Kulkarni (Inactive) made changes -
          Assignee Prutha Kulkarni [ prutha ]
          prutha Prutha Kulkarni (Inactive) made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          aloraine Ann Loraine made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          aloraine Ann Loraine made changes -
          Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
          aloraine Ann Loraine made changes -
          Assignee Prutha Kulkarni [ prutha ]
          prutha Prutha Kulkarni (Inactive) made changes -
          Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
          prutha Prutha Kulkarni (Inactive) made changes -
          Assignee Prutha Kulkarni [ prutha ]
          aloraine Ann Loraine made changes -
          Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
          aloraine Ann Loraine made changes -
          Assignee Ann Loraine [ aloraine ]
          aloraine Ann Loraine made changes -
          Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
          aloraine Ann Loraine made changes -
          Assignee Ann Loraine [ aloraine ]
          aloraine Ann Loraine made changes -
          Sprint Fall 2019 Sprint 3 [ 74 ] Fall 2019 Sprint 3, Fall 2019 Sprint 4 [ 74, 75 ]
          aloraine Ann Loraine made changes -
          Rank Ranked higher
          noor91zahara Noor Zahara (Inactive) made changes -
          Assignee Noor Zahara [ noor91zahara ]
          noor91zahara Noor Zahara (Inactive) made changes -
          Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
          noor91zahara Noor Zahara (Inactive) made changes -
          Assignee Noor Zahara [ noor91zahara ] Prutha Kulkarni [ prutha ]
          noor91zahara Noor Zahara (Inactive) made changes -
          Resolution Done [ 10000 ]
          Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
          aloraine Ann Loraine made changes -
          Workflow Fall 2019 Workflow Update [ 20767 ] Revised Fall 2019 Workflow Update [ 22512 ]

            People

            • Assignee:
              prutha Prutha Kulkarni (Inactive)
              Reporter:
              aloraine Ann Loraine
            • Votes:
              0 Vote for this issue
              Watchers:
              3 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: