Details
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Type: Bug
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:0.5
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Epic Link:
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Sprint:Fall 2019 Sprint 3, Fall 4 : 30 Sep to 11 Oct
Description
Investigate and propose a fix for the following.
The IGB App "Merge Annotation Operation" is currently failing with IGB 9.1.0, even though it can be installed. The problem may be due to a change in the API or possibly an OSGi wiring issue.
The bug:
You execute the usual workflow to install the App to IGB 9.1.0. However, when you try to find the App's menu item under Annotations tab > Multi-Track Operations, it is not there.
To reproduce:
1) Launch IGB 9.1.0
2) Select Arabidopsis genome (click flower picture next to the Mona Lisa)
3) Observe Araport track loads (this is an annotations track)
4) Open another annotations track by selecting its checkbox in the Available Data Sets section (TAIR10 is fine)
5) Load some data for the new track by clicking "Load Data" button or by choosing "Genome" in the Load Mode menu in the Data Management Table.
6) Select Annotations Tab
7) Click "Select All"
8) Now check the Operations menus. If you have installed Merge Annotations Operator, there should be an option "Merge" in this menu.
To install the App:
1) Go to https://bitbucket.org/lorainelab/merge-annotation-operator/src/master/
2) Click Downloads link
3) Copy URL
4) Add this repository as a new App repository in IGB
5) Install the App (it should appear as a new App in the App Manager)
Attachments
Activity
Field | Original Value | New Value |
---|---|---|
Epic Link | IGBF-1388 [ 17463 ] |
Rank | Ranked higher |
Assignee | Ann Loraine [ aloraine ] |
Sprint | Fall 2019 Sprint 4 [ 75 ] | Fall 2019 Sprint 3 [ 74 ] |
Rank | Ranked higher |
Assignee | Prutha Kulkarni [ prutha ] |
Status | Open [ 1 ] | To-Do [ 10305 ] |
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Assignee | Prutha Kulkarni [ prutha ] |
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Assignee | Prutha Kulkarni [ prutha ] |
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Assignee | Prutha Kulkarni [ prutha ] |
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Assignee | Ann Loraine [ aloraine ] |
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Assignee | Ann Loraine [ aloraine ] |
Sprint | Fall 2019 Sprint 3 [ 74 ] | Fall 2019 Sprint 3, Fall 2019 Sprint 4 [ 74, 75 ] |
Rank | Ranked higher |
Assignee | Noor Zahara [ noor91zahara ] |
Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Assignee | Noor Zahara [ noor91zahara ] | Prutha Kulkarni [ prutha ] |
Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Workflow | Fall 2019 Workflow Update [ 20767 ] | Revised Fall 2019 Workflow Update [ 22512 ] |
Please work on this after moving the two maven build related issues
IGBF-1945andIGBF-1993to Needs First Level Review.If you have questions or concerns, please let me know!