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  1. IGB
  2. IGBF-2010

Investigate why Merge Annotation Operator is failing to add itself to Operations Menu

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:

      Description

      Investigate and propose a fix for the following.

      The IGB App "Merge Annotation Operation" is currently failing with IGB 9.1.0, even though it can be installed. The problem may be due to a change in the API or possibly an OSGi wiring issue.

      The bug:

      You execute the usual workflow to install the App to IGB 9.1.0. However, when you try to find the App's menu item under Annotations tab > Multi-Track Operations, it is not there.

      To reproduce:

      1) Launch IGB 9.1.0
      2) Select Arabidopsis genome (click flower picture next to the Mona Lisa)
      3) Observe Araport track loads (this is an annotations track)
      4) Open another annotations track by selecting its checkbox in the Available Data Sets section (TAIR10 is fine)
      5) Load some data for the new track by clicking "Load Data" button or by choosing "Genome" in the Load Mode menu in the Data Management Table.
      6) Select Annotations Tab
      7) Click "Select All"
      8) Now check the Operations menus. If you have installed Merge Annotations Operator, there should be an option "Merge" in this menu.

      To install the App:

      1) Go to https://bitbucket.org/lorainelab/merge-annotation-operator/src/master/
      2) Click Downloads link
      3) Copy URL
      4) Add this repository as a new App repository in IGB
      5) Install the App (it should appear as a new App in the App Manager)

        Attachments

          Activity

          ann.loraine Ann Loraine made changes -
          Workflow Fall 2019 Workflow Update [ 20767 ] Revised Fall 2019 Workflow Update [ 22512 ]
          noor91zahara Noor Zahara (Inactive) made changes -
          Resolution Done [ 10000 ]
          Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
          noor91zahara Noor Zahara (Inactive) made changes -
          Assignee Noor Zahara [ noor91zahara ] Prutha Kulkarni [ prutha ]
          noor91zahara Noor Zahara (Inactive) made changes -
          Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
          noor91zahara Noor Zahara (Inactive) made changes -
          Assignee Noor Zahara [ noor91zahara ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          ann.loraine Ann Loraine made changes -
          Sprint Fall 2019 Sprint 3 [ 74 ] Fall 2019 Sprint 3, Fall 2019 Sprint 4 [ 74, 75 ]
          ann.loraine Ann Loraine made changes -
          Assignee Ann Loraine [ aloraine ]
          ann.loraine Ann Loraine made changes -
          Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
          ann.loraine Ann Loraine made changes -
          Assignee Ann Loraine [ aloraine ]
          ann.loraine Ann Loraine made changes -
          Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
          prutha Prutha Kulkarni (Inactive) made changes -
          Assignee Prutha Kulkarni [ prutha ]
          prutha Prutha Kulkarni (Inactive) made changes -
          Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
          ann.loraine Ann Loraine made changes -
          Assignee Prutha Kulkarni [ prutha ]
          ann.loraine Ann Loraine made changes -
          Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
          ann.loraine Ann Loraine made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          prutha Prutha Kulkarni (Inactive) made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          prutha Prutha Kulkarni (Inactive) made changes -
          Assignee Prutha Kulkarni [ prutha ]
          prutha Prutha Kulkarni (Inactive) made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          prutha Prutha Kulkarni (Inactive) made changes -
          Status Open [ 1 ] To-Do [ 10305 ]
          ann.loraine Ann Loraine made changes -
          Assignee Prutha Kulkarni [ prutha ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          ann.loraine Ann Loraine made changes -
          Sprint Fall 2019 Sprint 4 [ 75 ] Fall 2019 Sprint 3 [ 74 ]
          ann.loraine Ann Loraine made changes -
          Assignee Ann Loraine [ aloraine ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          ann.loraine Ann Loraine made changes -
          Field Original Value New Value
          Epic Link IGBF-1388 [ 17463 ]
          ann.loraine Ann Loraine created issue -

            People

            • Assignee:
              prutha Prutha Kulkarni (Inactive)
              Reporter:
              ann.loraine Ann Loraine
            • Votes:
              0 Vote for this issue
              Watchers:
              3 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: