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  1. IGB
  2. IGBF-2057

Publish IGB-CyVerse Apps

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          2
        • Epic Link:
        • Sprint:
          Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May, Spring 9 : 25 May to 8 Jun

          Description

          The two apps currently in CyVerse-IGB (coverage and scaled coverage) need to be made public in CyVerse to be accessible by any CyVerse user. Limited changes can be made to an app once it is public, so we need to make sure that the analyses functions are working correctly before making the apps public.

          Follow the information here to make the app public.

            Attachments

              Issue Links

              is blocked by

              Task - A task that needs to be done. IGBF-2119 Improve Analysis Experience

              • Major - Major loss of function.
              • Closed
              relates to

              Task - A task that needs to be done. IGBF-3181 Change coverage graph app output to bigwig

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                nfreese Nowlan Freese created issue -
                nfreese Nowlan Freese made changes -
                Field Original Value New Value
                Epic Link IGBF-1482 [ 17568 ]
                ann.loraine Ann Loraine made changes -
                Workflow Fall 2019 Workflow Update [ 20814 ] Revised Fall 2019 Workflow Update [ 21133 ]
                Status Open [ 1 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Summary Finalize CyVerse Coverage Apps for Public Publish IGB-CyVerse Apps
                nfreese Nowlan Freese made changes -
                Link This issue is blocked by IGBF-2119 [ IGBF-2119 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov [ 78 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec [ 78, 79 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec [ 78, 79 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec [ 78, 79, 80 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec [ 78, 79, 80 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 6 Jan to 17 Jan [ 78, 79, 80, 84 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan [ 78, 79, 80, 84 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan [ 78, 79, 80, 84, 85 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan [ 78, 79, 80, 84, 85 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb [ 78, 79, 80, 84, 85, 86 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb [ 78, 79, 80, 84, 85, 86 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 21 Feb [ 78, 79, 80, 84, 85, 86, 87 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb [ 78, 79, 80, 84, 85, 86, 87 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar [ 78, 79, 80, 84, 85, 86, 87, 89 ]
                nfreese Nowlan Freese made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar [ 78, 79, 80, 84, 85, 86, 87, 89 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar [ 78, 79, 80, 84, 85, 86, 87, 89, 90 ]
                nfreese Nowlan Freese made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar [ 78, 79, 80, 84, 85, 86, 87, 89, 90 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10 [ 78, 79, 80, 84, 85, 86, 87, 89, 90, 91 ]
                nfreese Nowlan Freese made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10 [ 78, 79, 80, 84, 85, 86, 87, 89, 90, 91 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr [ 78, 79, 80, 84, 85, 86, 87, 89, 90, 91, 92 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr [ 78, 79, 80, 84, 85, 86, 87, 89, 90, 91, 92 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May [ 78, 79, 80, 84, 85, 86, 87, 89, 90, 91, 92, 93 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Description The two apps currently in CyVerse-IGB (coverage and scaled coverage) need to be made public in CyVerse to be accessible by any CyVerse user. Limited changes can be made to an app once it is public, so we need to make sure that the analyses functions are working correctly before making the apps public.

                Follow the information [here | https://wiki.cyverse.org/wiki/display/DEmanual/Sharing+your+App+or+Workflow+and+Editing+the+User+Manual] to make the app public.                 		The two apps currently in CyVerse-IGB (coverage and scaled coverage) need to be made public in CyVerse to be accessible by any CyVerse user. Limited changes can be made to an app once it is public, so we need to make sure that the analyses functions are working correctly before making the apps public.

                Follow the information [here | https://cyverse.atlassian.net/wiki/spaces/DEmanual/pages/242027073/Sharing+your+App+or+Workflow+and+Editing+the+User+Manual] to make the app public.
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                nfreese Nowlan Freese made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                Hide
                Permalink
                nfreese Nowlan Freese added a comment - - edited

                The BioViz Connect apps should now be public.
                In order to test that they are public, I have unshared the apps with the BioViz Connect team.

                To test that the app is public and functioning correctly:
                1) Sign into CyVerse using your CyVerse account (not the nowlanf account).
                2) Navigate to https://connect.bioviz.org/base/#/iplant/home/shared/BioViz/example_data
                3) Run analysis for the three apps using the provided input files
                4) Check that the analysis completes successfully.
                5) Output should be in your user's analysis folder

                Show
                nfreese Nowlan Freese added a comment - - edited The BioViz Connect apps should now be public. In order to test that they are public, I have unshared the apps with the BioViz Connect team. To test that the app is public and functioning correctly: 1) Sign into CyVerse using your CyVerse account (not the nowlanf account). 2) Navigate to https://connect.bioviz.org/base/#/iplant/home/shared/BioViz/example_data 3) Run analysis for the three apps using the provided input files 4) Check that the analysis completes successfully. 5) Output should be in your user's analysis folder
                ann.loraine Ann Loraine made changes -
                Epic Link IGBF-1482 [ 17568 ] IGBF-2376 [ 18533 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May [ 78, 79, 80, 84, 85, 86, 87, 89, 90, 91, 92, 93 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May [ 78, 79, 80, 84, 85, 86, 87, 89, 90, 91, 92, 93, 94 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May [ 78, 79, 80, 84, 85, 86, 87, 89, 90, 91, 92, 93, 94 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May, Spring 9 : 25 May to 8 Jun [ 78, 79, 80, 84, 85, 86, 87, 89, 90, 91, 92, 93, 94, 95 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Assignee Chaitanya Kintali [ chaitanya ]
                chaitanya Chaitanya Kintali (Inactive) made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                Hide
                Permalink
                chaitanya Chaitanya Kintali (Inactive) added a comment -

                I have logged with my credentials. Navigated to the BioViz folder in the Community section and ran the analyses for all the three apps and I am able to see the output files in the home analyses folder for all the three apps.

                Nowlan Freese. Is there any other scenario that I missed to test as part of this ticket?

                Show
                chaitanya Chaitanya Kintali (Inactive) added a comment - I have logged with my credentials. Navigated to the BioViz folder in the Community section and ran the analyses for all the three apps and I am able to see the output files in the home analyses folder for all the three apps. Nowlan Freese . Is there any other scenario that I missed to test as part of this ticket?
                Hide
                Permalink
                nfreese Nowlan Freese added a comment -

                That should be good, thanks Chaitanya.

                Closing issue.

                Show
                nfreese Nowlan Freese added a comment - That should be good, thanks Chaitanya. Closing issue.
                nfreese Nowlan Freese made changes -
                Assignee Chaitanya Kintali [ chaitanya ] Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3181 [ IGBF-3181 ]

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: