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  1. IGB
  2. IGBF-2058

Limit View in IGB to correct file types (Terrain)

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Task: Limit the View in IGB button within BioViz-CyVerse to only the files that are viewable in IGB. This list/database will need to be updatable, as new filetypes are added to IGB on a regular basis.

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-2083 Color View in IGB Based on Public/Owner

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-1621 Limit View in IGB to accepted file types

              • Major - Major loss of function.
              • Closed

                Activity

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                stiwari8 Srishti Tiwari (Inactive) added a comment -

                View in IGB button is not getting displayed for bed files.

                Show
                stiwari8 Srishti Tiwari (Inactive) added a comment - View in IGB button is not getting displayed for bed files.
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                nfreese Nowlan Freese added a comment -

                Are we handling gzipped files (.gz)? Many bed files are gzipped.

                Show
                nfreese Nowlan Freese added a comment - Are we handling gzipped files (.gz)? Many bed files are gzipped.
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                stiwari8 Srishti Tiwari (Inactive) added a comment -

                I think in the Cyverse Environment we need to have all file types. Once that is done, this ticket will be thoroughly tested for all file types

                Show
                stiwari8 Srishti Tiwari (Inactive) added a comment - I think in the Cyverse Environment we need to have all file types. Once that is done, this ticket will be thoroughly tested for all file types
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                nfreese Nowlan Freese added a comment - - edited

                I will add in the smoketest files and will update this comment when it is complete.

                Edit: Files are in nowlanf > SmokeTesting > H_sapiens_Dec_2013

                All of the files except for the indexes (.bai and .tbi) should be viewable in IGB.

                It looks like some of the .gz files and bedGraph are not showing correctly.

                Show
                nfreese Nowlan Freese added a comment - - edited I will add in the smoketest files and will update this comment when it is complete. Edit: Files are in nowlanf > SmokeTesting > H_sapiens_Dec_2013 All of the files except for the indexes (.bai and .tbi) should be viewable in IGB. It looks like some of the .gz files and bedGraph are not showing correctly.
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                chaitanya Chaitanya Kintali (Inactive) added a comment -

                Code changes done and merged.
                Srishti Tiwari Can you please test the ticket if we can see the button based on the viewable file Formats.
                NOTE: Regarding whether to grey it out or not depending upon user permissions we have created another ticket. https://jira.transvar.org/browse/IGBF-2083 which is pushed onto next sprint.

                Show
                chaitanya Chaitanya Kintali (Inactive) added a comment - Code changes done and merged. Srishti Tiwari Can you please test the ticket if we can see the button based on the viewable file Formats. NOTE: Regarding whether to grey it out or not depending upon user permissions we have created another ticket. https://jira.transvar.org/browse/IGBF-2083 which is pushed onto next sprint.
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                nfreese Nowlan Freese added a comment - - edited

                Chaitanya fixed the issue with .gz and bedgraph files. The smoke testing data has the correct files showing with View in IGB.

                Closing issue.

                Show
                nfreese Nowlan Freese added a comment - - edited Chaitanya fixed the issue with .gz and bedgraph files. The smoke testing data has the correct files showing with View in IGB. Closing issue.

                  People

                  • Assignee:
                    chaitanya Chaitanya Kintali (Inactive)
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
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                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: