Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Minor
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
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      Description

      Situation: Data for testing various file formats when preparing to release new versions of IGB are stored at http://igbquickload.org/smokeTestingQuickload/. However, only Dr. Loraine can update/add additional files to this Quickload.

      Task: To make it simpler to update smoke testing data, files should be moved to S3. These changes will need to be reflected in the IGB release documentation

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            nfreese Nowlan Freese added a comment -

            Data have been moved to https://quickload-testing.s3.amazonaws.com/smokeTestingQuickload/ and can be added as a data source in IGB.

            Show
            nfreese Nowlan Freese added a comment - Data have been moved to https://quickload-testing.s3.amazonaws.com/smokeTestingQuickload/ and can be added as a data source in IGB.
            Hide
            nfreese Nowlan Freese added a comment -

            Text has been updated in the IGB Release Documentation: https://wiki.transvar.org/display/ITD/General+Smoke+Testing

            Show
            nfreese Nowlan Freese added a comment - Text has been updated in the IGB Release Documentation: https://wiki.transvar.org/display/ITD/General+Smoke+Testing
            Hide
            nfreese Nowlan Freese added a comment -

            To test:

            Add https://quickload-testing.s3.amazonaws.com/smokeTestingQuickload/ as a quickload in the Data Access tab.
            Open the human genome.
            In Available Data, open the various files contained within the quickload and make sure that the files load in IGB.

            Show
            nfreese Nowlan Freese added a comment - To test: Add https://quickload-testing.s3.amazonaws.com/smokeTestingQuickload/ as a quickload in the Data Access tab. Open the human genome. In Available Data, open the various files contained within the quickload and make sure that the files load in IGB.
            Hide
            pbadzuh Philip Badzuh (Inactive) added a comment -

            Everything looks good in the docs. The data can be loaded into IGB, but access via browser is denied - is this part of the design?

            Show
            pbadzuh Philip Badzuh (Inactive) added a comment - Everything looks good in the docs. The data can be loaded into IGB, but access via browser is denied - is this part of the design?
            Hide
            nfreese Nowlan Freese added a comment -

            As far as I can tell there is not a way to view the files in a directory structure through S3: https://www.reddit.com/r/aws/comments/5stycu/s3_bucket_want_to_view_bucket_like_a_directory/

            If anyone else knows more about this that would be great, as it would be useful to see the directory structure and files.

            Show
            nfreese Nowlan Freese added a comment - As far as I can tell there is not a way to view the files in a directory structure through S3: https://www.reddit.com/r/aws/comments/5stycu/s3_bucket_want_to_view_bucket_like_a_directory/ If anyone else knows more about this that would be great, as it would be useful to see the directory structure and files.
            Hide
            nfreese Nowlan Freese added a comment -

            I would probably change the URL from an embedded link back to the full URL in the documentation. It may be confusing for us when we smoketest if people expect something to happen when they click on that link, versus copying and pasting the full URL into IGB.

            Show
            nfreese Nowlan Freese added a comment - I would probably change the URL from an embedded link back to the full URL in the documentation. It may be confusing for us when we smoketest if people expect something to happen when they click on that link, versus copying and pasting the full URL into IGB.
            Hide
            pbadzuh Philip Badzuh (Inactive) added a comment -

            That makes sense. I've made the URL change.

            Show
            pbadzuh Philip Badzuh (Inactive) added a comment - That makes sense. I've made the URL change.
            Hide
            pbadzuh Philip Badzuh (Inactive) added a comment -

            I found an interesting way to get show S3 directory structure in a browser here: https://github.com/rufuspollock/s3-bucket-listing, but that would require running a web server dedicated just for this task.

            Show
            pbadzuh Philip Badzuh (Inactive) added a comment - I found an interesting way to get show S3 directory structure in a browser here: https://github.com/rufuspollock/s3-bucket-listing , but that would require running a web server dedicated just for this task.
            Hide
            ann.loraine Ann Loraine added a comment -

            Cool – I have seen this too.

            This reminds me to set up an AWS account for you so that that you can view the contents using the AWS S3 contents browser. I will do that shortly. Philip Badzuh

            Show
            ann.loraine Ann Loraine added a comment - Cool – I have seen this too. This reminds me to set up an AWS account for you so that that you can view the contents using the AWS S3 contents browser. I will do that shortly. Philip Badzuh

              People

              • Assignee:
                nfreese Nowlan Freese
                Reporter:
                nfreese Nowlan Freese
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                • Created:
                  Updated:
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