Nowlan Freese added a comment - 07/Nov/19 4:03 PM [Thu Nov 07 15:59:44.805426 2019] [wsgi:error] [pid 25693:tid 140656807245568] [remote 152.15.112.252:8686] {'AppId': 'c53d8c38-9c01-11e9-b4b7-008cfa5ae621', 'outputdir': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/', 'config': {'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c544a220-9c01-11e9-b4b7-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bam', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c54dfb54-9c01-11e9-b4b7-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bw', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c54f1160-9c01-11e9-b4b7-008cfa5ae621': 'bigwig', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_cbe353de-9dbd-11e9-b934-008cfa5ae621': 'Counts Per Million', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_cbe6070a-9dbd-11e9-b934-008cfa5ae621': '1', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_f418f434-9c10-11e9-89cd-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bai'}} [Thu Nov 07 16:23:25.278615 2019] [wsgi:error] [pid 25693:tid 140656714909440] [remote 152.15.112.252:2472] [<AppDetails: AppDetails object (91c41516-8c89-11e9-890e-008cfa5ae621)>, <AppDetails: AppDetails object (c53d8c38-9c01-11e9-b4b7-008cfa5ae621)>] [Thu Nov 07 16:25:43.018471 2019] [wsgi:error] [pid 25693:tid 140656714909440] [remote 152.15.112.252:32446] {'AppId': 'c53d8c38-9c01-11e9-b4b7-008cfa5ae621', 'outputdir': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/', 'config': {'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c544a220-9c01-11e9-b4b7-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bam', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c54dfb54-9c01-11e9-b4b7-008cfa5ae621': 'test', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c54f1160-9c01-11e9-b4b7-008cfa5ae621': 'bedgraph', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_cbe353de-9dbd-11e9-b934-008cfa5ae621': 'Counts Per Million', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_cbe6070a-9dbd-11e9-b934-008cfa5ae621': '100', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_f418f434-9c10-11e9-89cd-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bai'}} [Thu Nov 07 16:49:03.088007 2019] [wsgi:error] [pid 25693:tid 140656714909440] [remote 152.15.112.252:11812] [<AppDetails: AppDetails object (91c41516-8c89-11e9-890e-008cfa5ae621)>, <AppDetails: AppDetails object (c53d8c38-9c01-11e9-b4b7-008cfa5ae621)>] [Thu Nov 07 18:15:16.861892 2019] [wsgi:error] [pid 25693:tid 140656714909440] [remote 152.15.112.252:2880] [<AppDetails: AppDetails object (91c41516-8c89-11e9-890e-008cfa5ae621)>, <AppDetails: AppDetails object (c53d8c38-9c01-11e9-b4b7-008cfa5ae621)>] [Thu Nov 07 18:28:51.950069 2019] [wsgi:error] [pid 25693:tid 140656706508544] [remote 152.15.112.252:47878] [<AppDetails: AppDetails object (91c41516-8c89-11e9-890e-008cfa5ae621)>, <AppDetails: AppDetails object (c53d8c38-9c01-11e9-b4b7-008cfa5ae621)>] [Thu Nov 07 18:44:08.296627 2019] [wsgi:error] [pid 25693:tid 140656706508544] [remote 152.15.112.252:39501] [<AppDetails: AppDetails object (91c41516-8c89-11e9-890e-008cfa5ae621)>, <AppDetails: AppDetails object (c53d8c38-9c01-11e9-b4b7-008cfa5ae621)>] [Thu Nov 07 18:45:18.709275 2019] [wsgi:error] [pid 25693:tid 140656714909440] [remote 152.15.112.252:19499] [<AppDetails: AppDetails object (91c41516-8c89-11e9-890e-008cfa5ae621)>, <AppDetails: AppDetails object (c53d8c38-9c01-11e9-b4b7-008cfa5ae621)>] [Thu Nov 07 18:46:53.212253 2019] [wsgi:error] [pid 25693:tid 140656706508544] [remote 152.15.112.252:25533] [<AppDetails: AppDetails object (91c41516-8c89-11e9-890e-008cfa5ae621)>, <AppDetails: AppDetails object (c53d8c38-9c01-11e9-b4b7-008cfa5ae621)>] [Thu Nov 07 18:48:29.069175 2019] [wsgi:error] [pid 25693:tid 140656706508544] [remote 152.15.112.252:16756] [<AppDetails: AppDetails object (91c41516-8c89-11e9-890e-008cfa5ae621)>, <AppDetails: AppDetails object (c53d8c38-9c01-11e9-b4b7-008cfa5ae621)>] [Thu Nov 07 19:03:29.544546 2019] [wsgi:error] [pid 25693:tid 140656706508544] [remote 152.15.112.252:30393] [<AppDetails: AppDetails object (91c41516-8c89-11e9-890e-008cfa5ae621)>, <AppDetails: AppDetails object (c53d8c38-9c01-11e9-b4b7-008cfa5ae621)>] [Thu Nov 07 19:03:36.565164 2019] [wsgi:error] [pid 25693:tid 140656714909440] [remote 152.15.112.252:38321] [<AppDetails: AppDetails object (91c41516-8c89-11e9-890e-008cfa5ae621)>, <AppDetails: AppDetails object (c53d8c38-9c01-11e9-b4b7-008cfa5ae621)>] [Thu Nov 07 19:03:43.711208 2019] [wsgi:error] [pid 25693:tid 140656706508544] [remote 152.15.112.252:50904] [<AppDetails: AppDetails object (91c41516-8c89-11e9-890e-008cfa5ae621)>, <AppDetails: AppDetails object (c53d8c38-9c01-11e9-b4b7-008cfa5ae621)>] [Thu Nov 07 19:04:21.382409 2019] [wsgi:error] [pid 25693:tid 140656714909440] [remote 152.15.112.252:28916] [<AppDetails: AppDetails object (91c41516-8c89-11e9-890e-008cfa5ae621)>, <AppDetails: AppDetails object (c53d8c38-9c01-11e9-b4b7-008cfa5ae621)>] [Thu Nov 07 19:04:57.600089 2019] [wsgi:error] [pid 26933:tid 140062511605504] [remote 152.15.112.252:37727] [<AppDetails: AppDetails object (91c41516-8c89-11e9-890e-008cfa5ae621)>, <AppDetails: AppDetails object (c53d8c38-9c01-11e9-b4b7-008cfa5ae621)>] [Thu Nov 07 19:05:12.777239 2019] [wsgi:error] [pid 26933:tid 140062436071168] [remote 152.15.112.252:56744] [<AppDetails: AppDetails object (91c41516-8c89-11e9-890e-008cfa5ae621)>, <AppDetails: AppDetails object (c53d8c38-9c01-11e9-b4b7-008cfa5ae621)>] [Thu Nov 07 19:05:22.972915 2019] [wsgi:error] [pid 26933:tid 140062436071168] [remote 152.15.112.252:11352] {'AppId': '91c41516-8c89-11e9-890e-008cfa5ae621', 'outputdir': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/', 'config': {'91c4fecc-8c89-11e9-890e-008cfa5ae621_91c694bc-8c89-11e9-890e-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bam', '91c4fecc-8c89-11e9-890e-008cfa5ae621_bd9d0bba-8d1b-11e9-8836-008cfa5ae621': 'test6'}} [Thu Nov 07 19:06:01.545578 2019] [wsgi:error] [pid 26933:tid 140062436071168] [remote 152.15.112.252:9321] {'AppId': 'c53d8c38-9c01-11e9-b4b7-008cfa5ae621', 'outputdir': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/', 'config': {'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c544a220-9c01-11e9-b4b7-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bam', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c54dfb54-9c01-11e9-b4b7-008cfa5ae621': 'test8', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c54f1160-9c01-11e9-b4b7-008cfa5ae621': 'bedgraph', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_cbe353de-9dbd-11e9-b934-008cfa5ae621': 'None', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_cbe6070a-9dbd-11e9-b934-008cfa5ae621': '100', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_f418f434-9c10-11e9-89cd-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bai'}} [Thu Nov 07 19:06:26.248756 2019] [wsgi:error] [pid 26933:tid 140062444463872] [remote 152.15.112.252:21287] {'AppId': 'c53d8c38-9c01-11e9-b4b7-008cfa5ae621', 'outputdir': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/', 'config': {'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c544a220-9c01-11e9-b4b7-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bam', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c54dfb54-9c01-11e9-b4b7-008cfa5ae621': 'test9-bg-cpm-100.bedgraph', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c54f1160-9c01-11e9-b4b7-008cfa5ae621': 'bedgraph', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_cbe353de-9dbd-11e9-b934-008cfa5ae621': 'Counts Per Million', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_cbe6070a-9dbd-11e9-b934-008cfa5ae621': '100', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_f418f434-9c10-11e9-89cd-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bai'}} [Thu Nov 07 19:06:43.213126 2019] [wsgi:error] [pid 26933:tid 140062436071168] [remote 152.15.112.252:49843] {'AppId': 'c53d8c38-9c01-11e9-b4b7-008cfa5ae621', 'outputdir': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/', 'config': {'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c544a220-9c01-11e9-b4b7-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bam', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c54dfb54-9c01-11e9-b4b7-008cfa5ae621': 'test10-bw-cpm-100.bw', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c54f1160-9c01-11e9-b4b7-008cfa5ae621': 'bigwig', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_cbe353de-9dbd-11e9-b934-008cfa5ae621': 'Counts Per Million', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_cbe6070a-9dbd-11e9-b934-008cfa5ae621': '100', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_f418f434-9c10-11e9-89cd-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bai'}} [Thu Nov 07 19:06:59.441630 2019] [wsgi:error] [pid 26933:tid 140062444463872] [remote 152.15.112.252:13048] {'AppId': 'c53d8c38-9c01-11e9-b4b7-008cfa5ae621', 'outputdir': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/', 'config': {'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c544a220-9c01-11e9-b4b7-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bam', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c54dfb54-9c01-11e9-b4b7-008cfa5ae621': 'test10-bg-none-100.bedgraph', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c54f1160-9c01-11e9-b4b7-008cfa5ae621': 'bigwig', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_cbe353de-9dbd-11e9-b934-008cfa5ae621': 'None', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_cbe6070a-9dbd-11e9-b934-008cfa5ae621': '100', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_f418f434-9c10-11e9-89cd-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bai'}} [Thu Nov 07 19:07:16.957580 2019] [wsgi:error] [pid 26933:tid 140062436071168] [remote 152.15.112.252:45804] {'AppId': 'c53d8c38-9c01-11e9-b4b7-008cfa5ae621', 'outputdir': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/', 'config': {'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c544a220-9c01-11e9-b4b7-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bam', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c54dfb54-9c01-11e9-b4b7-008cfa5ae621': 'test12-bw-none-100.bw', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_c54f1160-9c01-11e9-b4b7-008cfa5ae621': 'bigwig', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_cbe353de-9dbd-11e9-b934-008cfa5ae621': 'None', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_cbe6070a-9dbd-11e9-b934-008cfa5ae621': '100', 'c53e2896-9c01-11e9-b4b7-008cfa5ae621_f418f434-9c10-11e9-89cd-008cfa5ae621': '/iplant/home/nowlanf/SmokeTesting/H_sapiens_Dec_2013/Bam_HomoSapien.bai'} }

Chaitanya Kintali (Inactive) added a comment - 10/Dec/19 1:52 AM Nowlan Freese , I have been testing various files in "/iplant/home/nowlanf/testFiles/" location. I found out, none of the files from that folder location are able to run successfully for any analysis. To confirm this behaviour i have copied the Bam_HomoSapien.bam(which was working fine) from SmokeTesting folder to testFiles folder. the analysis failed. and I have tweaked the code to output all the output files to nowlanf/output folder and observed all the analysis were able to run successfully. Clearly, the issue here is folder, especially when an app trying to output files to testFiles folder locaiton.

Nowlan Freese added a comment - 10/Dec/19 3:07 PM Chaitanya Kintali , good to know, I will take a look and figure out what is going on with the folder. Thank you for looking into this.

Nowlan Freese added a comment - 03/Feb/20 9:55 AM This issue related to logging statements in the code used for testing analysis submissions - these were not necessarily actual errors being logged. The other issue of analyses failing in specific directories will be addressed in IGBF-2119 which contains multiple analysis issues to be addressed.