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  1. IGB
  2. IGBF-2123

Investigate: Re-design and update Transcript isoform App

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          4
        • Epic Link:
        • Sprint:
          Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May, Spring 9 : 25 May to 8 Jun, Summer 1: 8 Jun - 19 Jun

          Description

          When we first started migrating to OSGi, developer Lance Frohman (Genentech) created a plug-in that drew a sashimi-plot graphic on top of gene models to highlight splicing support.

          Recently, we moved the code to a new repository:

          https://bitbucket.org/lorainelab/development-apps/src/master/TranscriptIsoform/

          Let's revisit this code and investigate what it would be take to implement it now.

            Attachments

              Issue Links

              blocks

              Task - A task that needs to be done. IGBF-2373 Move transcript isoform App into a separate repository

              • Major - Major loss of function.
              • Closed
              relates to

              Bug - A problem which impairs or prevents the functions of the product. PLUGIN-16 TranscriptIsoform fails to load from BioViz (but loads fine from BioViz Development)

              • Major - Major loss of function.
              • Open

              Bug - A problem which impairs or prevents the functions of the product. PLUGIN-12 TranscriptIsoform plug in does NOT allow 'deselection' of reads if you click the chevron

              • Major - Major loss of function.
              • Reopened

              New Plugin - actual specs for new plugin PLUGIN-11 Transcript Isoform update

              • Minor - Minor loss of function, or other problem where easy workaround is present.
              • Open

                Activity

                Ascending order - Click to sort in descending order
                ann.loraine Ann Loraine created issue -
                ann.loraine Ann Loraine made changes -
                Field Original Value New Value
                Epic Link IGBF-1908 [ 17998 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to PLUGIN-11 [ PLUGIN-11 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to PLUGIN-12 [ PLUGIN-12 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to PLUGIN-16 [ PLUGIN-16 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 9 : 9 Dec to 20 Dec [ 80 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Spring 3 : 3 Feb to 14 Feb [ 86 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Spring 3 : 3 Feb to 14 Feb [ 86 ] Spring 3 : 17 Feb to 21 Feb [ 87 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 3 : 17 Feb to 21 Feb [ 87 ] Spring 3 : 3 Feb to 14 Feb [ 86 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked lower
                ann.loraine Ann Loraine made changes -
                Sprint Spring 3 : 3 Feb to 14 Feb [ 86 ] Spring 3 : 17 Feb to 21 Feb [ 87 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Sprint Spring 3 : 17 Feb to 28 Feb [ 87 ] Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar [ 87, 89 ]
                nfreese Nowlan Freese made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Sprint Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar [ 87, 89 ] Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar [ 87, 89, 90 ]
                nfreese Nowlan Freese made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar [ 87, 89, 90 ] Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 6 : 30 Mar to Apr 10 [ 87, 89, 91 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked lower
                prutha Prutha Kulkarni (Inactive) made changes -
                Assignee Prutha Kulkarni [ prutha ]
                prutha Prutha Kulkarni (Inactive) made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 6 : 30 Mar to Apr 10 [ 87, 89, 91 ] Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr [ 87, 89, 91, 92 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                prutha Prutha Kulkarni (Inactive) made changes -
                Attachment Screen Shot 2020-04-22 at 2.06.30 AM.png [ 14695 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr [ 87, 89, 91, 92 ] Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May [ 87, 89, 91, 92, 93 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                prutha Prutha Kulkarni (Inactive) made changes -
                Attachment repository.xml [ 14702 ]
                ann.loraine Ann Loraine made changes -
                Attachment transcript_isoform_chevron.png [ 14703 ]
                prutha Prutha Kulkarni (Inactive) made changes -
                Attachment Screen Shot 2020-05-06 at 2.39.21 PM.png [ 14711 ]
                prutha Prutha Kulkarni (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                ann.loraine Ann Loraine made changes -
                Link This issue blocks IGBF-2373 [ IGBF-2373 ]
                prutha Prutha Kulkarni (Inactive) made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                prutha Prutha Kulkarni (Inactive) made changes -
                Assignee Prutha Kulkarni [ prutha ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May [ 87, 89, 91, 92, 93 ] Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May [ 87, 89, 91, 92, 93, 94 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May [ 87, 89, 91, 92, 93, 94 ] Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May, Spring 9 : 25 May to 8 Jun [ 87, 89, 91, 92, 93, 94, 95 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May, Spring 9 : 25 May to 8 Jun [ 87, 89, 91, 92, 93, 94, 95 ] Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May, Spring 9 : 25 May to 8 Jun, Summer 1: 8 Jun - 19 Jun [ 87, 89, 91, 92, 93, 94, 95, 96 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                pbadzuh Philip Badzuh (Inactive) made changes -
                Assignee Philip Badzuh [ pbadzuh ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Attachment overlapping_chevrons.png [ 14763 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Assignee Philip Badzuh [ pbadzuh ]

                  People

                  • Assignee:
                    Unassigned
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
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                    Watchers:
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                    Dates

                    • Created:
                      Updated:
                      Resolved: