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  1. IGB Plug-ins
  2. PLUGIN-16

TranscriptIsoform fails to load from BioViz (but loads fine from BioViz Development)

    Details

    • Type: Bug
    • Status: Open (View Workflow)
    • Priority: Major
    • Resolution: Unresolved
    • Labels:
      None

      Description

      ERROR: Resolver: Start error - TranscriptIsoform
      org.osgi.framework.BundleException: Activator start error in bundle TranscriptIsoform [55].
      at org.apache.felix.framework.Felix.activateBundle(Felix.java:2027)
      at org.apache.felix.framework.Felix.startBundle(Felix.java:1895)
      at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:944)
      at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:931)
      at org.apache.felix.bundlerepository.impl.ResolverImpl.deploy(ResolverImpl.java:630)
      at org.apache.felix.bundlerepository.impl.wrapper.ResolverWrapper.deploy(ResolverWrapper.java:89)
      at com.affymetrix.igb.plugins.PluginsView.installBundle(PluginsView.java:529)
      at com.affymetrix.igb.plugins.BundleTableModel$1.setValue(BundleTableModel.java:213)
      at com.affymetrix.igb.plugins.BundleTableModel.setValueAt(BundleTableModel.java:358)
      at javax.swing.JTable.setValueAt(JTable.java:2710)
      at com.jidesoft.grid.JideTable.editingStopped(Unknown Source)
      at javax.swing.AbstractCellEditor.fireEditingStopped(AbstractCellEditor.java:125)
      at javax.swing.DefaultCellEditor$EditorDelegate.stopCellEditing(DefaultCellEditor.java:350)
      at javax.swing.DefaultCellEditor.stopCellEditing(DefaultCellEditor.java:215)
      at javax.swing.DefaultCellEditor$EditorDelegate.actionPerformed(DefaultCellEditor.java:367)
      at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
      at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
      at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
      at javax.swing.JToggleButton$ToggleButtonModel.setPressed(JToggleButton.java:291)
      at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
      at java.awt.Component.processMouseEvent(Component.java:6382)
      at javax.swing.JComponent.processMouseEvent(JComponent.java:3275)
      at java.awt.Component.processEvent(Component.java:6147)
      at java.awt.Container.processEvent(Container.java:2083)
      at java.awt.Component.dispatchEventImpl(Component.java:4744)
      at java.awt.Container.dispatchEventImpl(Container.java:2141)
      at java.awt.Component.dispatchEvent(Component.java:4572)
      at javax.swing.plaf.basic.BasicTableUI$Handler.repostEvent(BasicTableUI.java:918)
      at javax.swing.plaf.basic.BasicTableUI$Handler.mouseReleased(BasicTableUI.java:1134)
      at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
      at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
      at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
      at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
      at java.awt.Component.processMouseEvent(Component.java:6382)
      at javax.swing.JComponent.processMouseEvent(JComponent.java:3275)
      at java.awt.Component.processEvent(Component.java:6147)
      at java.awt.Container.processEvent(Container.java:2083)
      at java.awt.Component.dispatchEventImpl(Component.java:4744)
      at java.awt.Container.dispatchEventImpl(Container.java:2141)
      at java.awt.Component.dispatchEvent(Component.java:4572)
      at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619)
      at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280)
      at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210)
      at java.awt.Container.dispatchEventImpl(Container.java:2127)
      at java.awt.Window.dispatchEventImpl(Window.java:2489)
      at java.awt.Component.dispatchEvent(Component.java:4572)
      at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:704)
      at java.awt.EventQueue.access$400(EventQueue.java:82)
      at java.awt.EventQueue$2.run(EventQueue.java:663)
      at java.awt.EventQueue$2.run(EventQueue.java:661)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
      at java.awt.EventQueue$3.run(EventQueue.java:677)
      at java.awt.EventQueue$3.run(EventQueue.java:675)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
      at java.awt.EventQueue.dispatchEvent(EventQueue.java:674)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
      at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
      at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
      Caused by: java.lang.NoClassDefFoundError: com/affymetrix/igb/shared/TierGlyph$Direction
      at com.gene.transcriptisoform.TranscriptIsoformEvidenceVisualizationManager.<clinit>(Unknown Source)
      at com.gene.transcriptisoform.Activator.registerServices(Unknown Source)
      at com.gene.transcriptisoform.Activator.start(Unknown Source)
      at org.apache.felix.framework.util.SecureAction$Actions.run(SecureAction.java:1600)
      at java.security.AccessController.doPrivileged(Native Method)
      at org.apache.felix.framework.util.SecureAction.startActivator(SecureAction.java:632)
      at org.apache.felix.framework.Felix.activateBundle(Felix.java:1977)
      ... 63 more
      Caused by: java.lang.ClassNotFoundException: com.affymetrix.igb.shared.TierGlyph$Direction not found by com.affymetrix.igb.IGB [30]
      at org.apache.felix.framework.BundleWiringImpl.findClassOrResourceByDelegation(BundleWiringImpl.java:1460)
      at org.apache.felix.framework.BundleWiringImpl.access$400(BundleWiringImpl.java:72)
      at org.apache.felix.framework.BundleWiringImpl$BundleClassLoader.loadClass(BundleWiringImpl.java:1843)
      at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
      at org.apache.felix.framework.BundleWiringImpl.getClassByDelegation(BundleWiringImpl.java:1317)
      at org.apache.felix.framework.BundleWiringImpl.searchImports(BundleWiringImpl.java:1481)
      at org.apache.felix.framework.BundleWiringImpl.findClassOrResourceByDelegation(BundleWiringImpl.java:1427)
      at org.apache.felix.framework.BundleWiringImpl.access$400(BundleWiringImpl.java:72)
      at org.apache.felix.framework.BundleWiringImpl$BundleClassLoader.loadClass(BundleWiringImpl.java:1843)
      at java.lang.ClassLoader.loadClass(ClassLoader.java:247)

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              • Assignee:
                hiralv Hiral Vora (Inactive)
                Reporter:
                alyssa Alyssa Gulledge (Inactive)
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                Dates

                • Created:
                  Updated: