Details
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Type: Bug
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Status: Open (View Workflow)
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Priority: Major
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Resolution: Unresolved
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Labels:None
Description
ERROR: Resolver: Start error - TranscriptIsoform
org.osgi.framework.BundleException: Activator start error in bundle TranscriptIsoform [55].
at org.apache.felix.framework.Felix.activateBundle(Felix.java:2027)
at org.apache.felix.framework.Felix.startBundle(Felix.java:1895)
at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:944)
at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:931)
at org.apache.felix.bundlerepository.impl.ResolverImpl.deploy(ResolverImpl.java:630)
at org.apache.felix.bundlerepository.impl.wrapper.ResolverWrapper.deploy(ResolverWrapper.java:89)
at com.affymetrix.igb.plugins.PluginsView.installBundle(PluginsView.java:529)
at com.affymetrix.igb.plugins.BundleTableModel$1.setValue(BundleTableModel.java:213)
at com.affymetrix.igb.plugins.BundleTableModel.setValueAt(BundleTableModel.java:358)
at javax.swing.JTable.setValueAt(JTable.java:2710)
at com.jidesoft.grid.JideTable.editingStopped(Unknown Source)
at javax.swing.AbstractCellEditor.fireEditingStopped(AbstractCellEditor.java:125)
at javax.swing.DefaultCellEditor$EditorDelegate.stopCellEditing(DefaultCellEditor.java:350)
at javax.swing.DefaultCellEditor.stopCellEditing(DefaultCellEditor.java:215)
at javax.swing.DefaultCellEditor$EditorDelegate.actionPerformed(DefaultCellEditor.java:367)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
at javax.swing.JToggleButton$ToggleButtonModel.setPressed(JToggleButton.java:291)
at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
at java.awt.Component.processMouseEvent(Component.java:6382)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3275)
at java.awt.Component.processEvent(Component.java:6147)
at java.awt.Container.processEvent(Container.java:2083)
at java.awt.Component.dispatchEventImpl(Component.java:4744)
at java.awt.Container.dispatchEventImpl(Container.java:2141)
at java.awt.Component.dispatchEvent(Component.java:4572)
at javax.swing.plaf.basic.BasicTableUI$Handler.repostEvent(BasicTableUI.java:918)
at javax.swing.plaf.basic.BasicTableUI$Handler.mouseReleased(BasicTableUI.java:1134)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
at java.awt.Component.processMouseEvent(Component.java:6382)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3275)
at java.awt.Component.processEvent(Component.java:6147)
at java.awt.Container.processEvent(Container.java:2083)
at java.awt.Component.dispatchEventImpl(Component.java:4744)
at java.awt.Container.dispatchEventImpl(Container.java:2141)
at java.awt.Component.dispatchEvent(Component.java:4572)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210)
at java.awt.Container.dispatchEventImpl(Container.java:2127)
at java.awt.Window.dispatchEventImpl(Window.java:2489)
at java.awt.Component.dispatchEvent(Component.java:4572)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:704)
at java.awt.EventQueue.access$400(EventQueue.java:82)
at java.awt.EventQueue$2.run(EventQueue.java:663)
at java.awt.EventQueue$2.run(EventQueue.java:661)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
at java.awt.EventQueue$3.run(EventQueue.java:677)
at java.awt.EventQueue$3.run(EventQueue.java:675)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:674)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
Caused by: java.lang.NoClassDefFoundError: com/affymetrix/igb/shared/TierGlyph$Direction
at com.gene.transcriptisoform.TranscriptIsoformEvidenceVisualizationManager.<clinit>(Unknown Source)
at com.gene.transcriptisoform.Activator.registerServices(Unknown Source)
at com.gene.transcriptisoform.Activator.start(Unknown Source)
at org.apache.felix.framework.util.SecureAction$Actions.run(SecureAction.java:1600)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.felix.framework.util.SecureAction.startActivator(SecureAction.java:632)
at org.apache.felix.framework.Felix.activateBundle(Felix.java:1977)
... 63 more
Caused by: java.lang.ClassNotFoundException: com.affymetrix.igb.shared.TierGlyph$Direction not found by com.affymetrix.igb.IGB [30]
at org.apache.felix.framework.BundleWiringImpl.findClassOrResourceByDelegation(BundleWiringImpl.java:1460)
at org.apache.felix.framework.BundleWiringImpl.access$400(BundleWiringImpl.java:72)
at org.apache.felix.framework.BundleWiringImpl$BundleClassLoader.loadClass(BundleWiringImpl.java:1843)
at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
at org.apache.felix.framework.BundleWiringImpl.getClassByDelegation(BundleWiringImpl.java:1317)
at org.apache.felix.framework.BundleWiringImpl.searchImports(BundleWiringImpl.java:1481)
at org.apache.felix.framework.BundleWiringImpl.findClassOrResourceByDelegation(BundleWiringImpl.java:1427)
at org.apache.felix.framework.BundleWiringImpl.access$400(BundleWiringImpl.java:72)
at org.apache.felix.framework.BundleWiringImpl$BundleClassLoader.loadClass(BundleWiringImpl.java:1843)
at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
Attachments
Issue Links
- relates to
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IGBF-2123 Investigate: Re-design and update Transcript isoform App
- Closed