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  1. IGB
  2. IGBF-2123

Investigate: Re-design and update Transcript isoform App

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          4
        • Epic Link:
        • Sprint:
          Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May, Spring 9 : 25 May to 8 Jun, Summer 1: 8 Jun - 19 Jun

          Description

          When we first started migrating to OSGi, developer Lance Frohman (Genentech) created a plug-in that drew a sashimi-plot graphic on top of gene models to highlight splicing support.

          Recently, we moved the code to a new repository:

          https://bitbucket.org/lorainelab/development-apps/src/master/TranscriptIsoform/

          Let's revisit this code and investigate what it would be take to implement it now.

            Attachments

              Issue Links

              blocks

              Task - A task that needs to be done. IGBF-2373 Move transcript isoform App into a separate repository

              • Major - Major loss of function.
              • Closed
              relates to

              Bug - A problem which impairs or prevents the functions of the product. PLUGIN-16 TranscriptIsoform fails to load from BioViz (but loads fine from BioViz Development)

              • Major - Major loss of function.
              • Open

              Bug - A problem which impairs or prevents the functions of the product. PLUGIN-12 TranscriptIsoform plug in does NOT allow 'deselection' of reads if you click the chevron

              • Major - Major loss of function.
              • Reopened

              New Plugin - actual specs for new plugin PLUGIN-11 Transcript Isoform update

              • Minor - Minor loss of function, or other problem where easy workaround is present.
              • Open

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                  People

                  • Assignee:
                    Unassigned
                    Reporter:
                    ann.loraine Ann Loraine
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                    Dates

                    • Created:
                      Updated:
                      Resolved: