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  1. IGB
  2. IGBF-2142

Link IGB to Galaxy

        Details

        • Type: New Feature
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Fixed
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Link up IGB to Galaxy so that Galaxy users can display their "BAM" files in IGB without first having to download them.

            Attachments

            1. bigwig.xml
              4 kB
            2. bed.xml
              4 kB
            3. bb.xml
              0.7 kB
            4. bb.xml
              3 kB

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-4011 Enable IGB to open Galaxy CRAM format data sets

              • Major - Major loss of function.
              • Closed

                Activity

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                hiralv Hiral Vora (Inactive) added a comment -

                Done.

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                hiralv Hiral Vora (Inactive) added a comment - Done.
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                hiralv Hiral Vora (Inactive) added a comment - - edited

                Attached are xml file required by Galaxy. Bed works fine but BigBed doesn't work. Task is: get BigBed to work.

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                hiralv Hiral Vora (Inactive) added a comment - - edited Attached are xml file required by Galaxy. Bed works fine but BigBed doesn't work. Task is: get BigBed to work.
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                ann.loraine Ann Loraine added a comment -

                We will need to test with Alyssa and/or Ann to check everything is working. If BigBed is fixed, BigWig will also be fixed.
                Before we submit the XML files to Galaxy project we need to test them first.

                Show
                ann.loraine Ann Loraine added a comment - We will need to test with Alyssa and/or Ann to check everything is working. If BigBed is fixed, BigWig will also be fixed. Before we submit the XML files to Galaxy project we need to test them first.
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                jfvillal jfvillal added a comment -

                The attached files enable IGB deployment from Galaxy. The HTTP container must support seekable downloads. This note is included with the files as well.

                Show
                jfvillal jfvillal added a comment - The attached files enable IGB deployment from Galaxy. The HTTP container must support seekable downloads. This note is included with the files as well.

                  People

                  • Assignee:
                    hiralv Hiral Vora (Inactive)
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
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                    Dates

                    • Created:
                      Updated:
                      Resolved:

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