Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-2142

Link IGB to Galaxy

        Details

        • Type: New Feature
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Fixed
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Link up IGB to Galaxy so that Galaxy users can display their "BAM" files in IGB without first having to download them.

            Attachments

            1. bb.xml
              3 kB
              jfvillal
            2. bb.xml
              0.7 kB
              Hiral Vora
            3. bed.xml
              4 kB
              Hiral Vora
            4. bigwig.xml
              4 kB
              jfvillal

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-4011 Enable IGB to open Galaxy CRAM format data sets

              • Major - Major loss of function.
              • Closed

                Activity

                Descending order - Click to sort in ascending order
                Hide
                Permalink
                jfvillal jfvillal added a comment -

                The attached files enable IGB deployment from Galaxy. The HTTP container must support seekable downloads. This note is included with the files as well.

                Show
                jfvillal jfvillal added a comment - The attached files enable IGB deployment from Galaxy. The HTTP container must support seekable downloads. This note is included with the files as well.
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                We will need to test with Alyssa and/or Ann to check everything is working. If BigBed is fixed, BigWig will also be fixed.
                Before we submit the XML files to Galaxy project we need to test them first.

                Show
                ann.loraine Ann Loraine added a comment - We will need to test with Alyssa and/or Ann to check everything is working. If BigBed is fixed, BigWig will also be fixed. Before we submit the XML files to Galaxy project we need to test them first.
                Hide
                Permalink
                hiralv Hiral Vora (Inactive) added a comment - - edited

                Attached are xml file required by Galaxy. Bed works fine but BigBed doesn't work. Task is: get BigBed to work.

                Show
                hiralv Hiral Vora (Inactive) added a comment - - edited Attached are xml file required by Galaxy. Bed works fine but BigBed doesn't work. Task is: get BigBed to work.
                Hide
                Permalink
                hiralv Hiral Vora (Inactive) added a comment -

                Done.

                Show
                hiralv Hiral Vora (Inactive) added a comment - Done.

                  People

                  • Assignee:
                    hiralv Hiral Vora (Inactive)
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    0 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved:

                      Time Tracking

                      Estimated:
                      Original Estimate - Not Specified
                      Not Specified
                      Remaining:
                      Remaining Estimate - 0 minutes
                      0m
                      Logged:
                      Time Spent - 4 days
                      4d