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  1. IGB
  2. IGBF-2243

Deploy Genoviz SDK Javadocs on Bioviz

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          0.25
        • Epic Link:
        • Sprint:
          Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May

          Description

          To help developers understand how to use the Genoviz SDK, we should deploy the javadocs on an easy to reach location.

          For this task, add new menu item to BioViz.org under "For Developers" - call it "GenViz SDK Javadocs"

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              relates to

              Task - A task that needs to be done. IGBF-2228 Build javadocs for Genoviz SDK and copy compiled javadocs to Downloads

              • Major - Major loss of function.
              • Closed

                Activity

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                6 older comments
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                noor91zahara Noor Zahara (Inactive) added a comment -

                I squashed the changes and created a PR

                https://bitbucket.org/lorainelab/bioviz/pull-requests/38/igbf-2243-deploy-genoviz-sdk-javadocs-on/diff

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                noor91zahara Noor Zahara (Inactive) added a comment - I squashed the changes and created a PR https://bitbucket.org/lorainelab/bioviz/pull-requests/38/igbf-2243-deploy-genoviz-sdk-javadocs-on/diff
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                ann.loraine Ann Loraine added a comment -

                To test:

                • Deploy bioviz site on an EC2
                • Run the script
                • Check that the javadocs can be navigated
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                ann.loraine Ann Loraine added a comment - To test: Deploy bioviz site on an EC2 Run the script Check that the javadocs can be navigated
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                ann.loraine Ann Loraine added a comment -

                I followed the above steps and observed an error when running the script.

                I tested the "tar" command and noticed this error:

                AnnBioviz root $ tar xvzf genoviz-1.1.9-javadoc.jar
                gzip: stdin has more than one entry--rest ignored
                tar: Child returned status 2
                tar: Error is not recoverable: exiting now

                Returning to To-Do for Noor Zahara to take a look.

                Show
                ann.loraine Ann Loraine added a comment - I followed the above steps and observed an error when running the script. I tested the "tar" command and noticed this error: AnnBioviz root $ tar xvzf genoviz-1.1.9-javadoc.jar gzip: stdin has more than one entry--rest ignored tar: Child returned status 2 tar: Error is not recoverable: exiting now Returning to To-Do for Noor Zahara to take a look.
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                noor91zahara Noor Zahara (Inactive) added a comment - - edited

                [~aloraine] - Could you try the same command without the z i.e tar xvf genoviz-1.1.9-javadoc.jar ?

                I have made the changes to the script.

                Show
                noor91zahara Noor Zahara (Inactive) added a comment - - edited [~aloraine] - Could you try the same command without the z i.e tar xvf genoviz-1.1.9-javadoc.jar ? I have made the changes to the script.
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                ann.loraine Ann Loraine added a comment -

                Migrated the command to ansible playbook which will be used to deploy and provision bioviz Web sites.
                Also, as part of the provisioning process, added creation of a sub-directory under "releases" named for the version of genoviz.
                A symbolic link "current" links to the current release.
                Also, changed the link in BioViz hmtl to "current" instead of "releases/index.html".
                Moving this to Done.

                Show
                ann.loraine Ann Loraine added a comment - Migrated the command to ansible playbook which will be used to deploy and provision bioviz Web sites. Also, as part of the provisioning process, added creation of a sub-directory under "releases" named for the version of genoviz. A symbolic link "current" links to the current release. Also, changed the link in BioViz hmtl to "current" instead of "releases/index.html". Moving this to Done.

                  People

                  • Assignee:
                    noor91zahara Noor Zahara (Inactive)
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
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                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: