Details
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Type: Task
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May
Description
Add breakpoints to the annotation factory class in com.affymetrix.igb.view.factories and observe what happens when you click Load Data after opening a narrowpeak file.
Based on looking at the code, it looks like this method:
private void addAnnotationGlyphs(SeqMapView smv, RootSeqSymmetry annotSym, BioSeq seq)
in
com.affymetrix.igb.view.TrackView
Is where the MapTierGlyphFactoryI for a given data set is identified and used to add Glyphs to IGB's SeqMapView
We need to confirm this.
Ideally, we can write a new new factory class that will let us add custom Glyphs to a genotyping results class, simply by adding the factory to the service registry for same.
If you have some tips or advice for the next developer who works on this, please add them to this ticket. Then move to Done. If not, also move to Done.
cc: Srishti Tiwari