Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May
Description
Add breakpoints to the annotation factory class in com.affymetrix.igb.view.factories and observe what happens when you click Load Data after opening a narrowpeak file.
Based on looking at the code, it looks like this method:
private void addAnnotationGlyphs(SeqMapView smv, RootSeqSymmetry annotSym, BioSeq seq)
in
com.affymetrix.igb.view.TrackView
Is where the MapTierGlyphFactoryI for a given data set is identified and used to add Glyphs to IGB's SeqMapView
We need to confirm this.
Ideally, we can write a new new factory class that will let us add custom Glyphs to a genotyping results class, simply by adding the factory to the service registry for same.
