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  1. IGB
  2. IGBF-2249

Create stub classes for the project - parsing, models

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Critical
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Create new "stub" classes for the project, using the design in IGBF-2247.

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              is blocked by

              Task - A task that needs to be done. IGBF-2247 Sketch code structure

              • Blocker - Blocks development and/or testing work, production could not run.
              • Closed

                Activity

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                ann.loraine Ann Loraine created issue -
                ann.loraine Ann Loraine made changes -
                Field Original Value New Value
                Epic Link IGBF-2246 [ 18393 ]
                ann.loraine Ann Loraine made changes -
                Link This issue is blocked by IGBF-2247 [ IGBF-2247 ]
                ann.loraine Ann Loraine made changes -
                Description Create new "stub" classes for the project, using the design in the blocking issue. Create new "stub" classes for the project, using the design in IGBF-2247.
                ann.loraine Ann Loraine made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Summary Create stub classes for the project Create stub classes for the project - parsing, models
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Srishti Tiwari [ stiwari8 ]
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                ann.loraine Ann Loraine added a comment - - edited

                To test, check that the stub classes can compile.
                To review, read the code and make note of any questions about the design and structure.

                Show
                ann.loraine Ann Loraine added a comment - - edited To test, check that the stub classes can compile. To review, read the code and make note of any questions about the design and structure.
                ann.loraine Ann Loraine made changes -
                Priority Major [ 3 ] Critical [ 2 ]
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                ann.loraine Ann Loraine added a comment -

                Created:

                • plugins/GenotypingResults/src/main/java/org/lorainelab/igb/genotyping/GenotypeFileHandler.java
                • plugins/GenotypingResults/src/main/java/org/lorainelab/igb/genotyping/TwentyThreeAndMeSymLoader.java
                • data model - plugins/GenotypingResults/src/main/java/org/lorainelab/igb/genotyping/TwentyThreeAndMeVariationSym.java

                Added example data file:

                • plugins/GenotypingResults/src/test/resources/sample23andMe.23andMe

                Added pom.xml:

                • plugins/GenotypingResults/pom.xml

                Still to do:

                • Add TwentyThreeAndMeVariationGlyph.java - a subclass of Glyph that draws a TwentyThreeAndMeVariationSym.java
                • Add GenotypingResultsFactory.java - implements factory methods for adding above Glyphs to a SeqMapView
                Show
                ann.loraine Ann Loraine added a comment - Created: plugins/GenotypingResults/src/main/java/org/lorainelab/igb/genotyping/GenotypeFileHandler.java plugins/GenotypingResults/src/main/java/org/lorainelab/igb/genotyping/TwentyThreeAndMeSymLoader.java data model - plugins/GenotypingResults/src/main/java/org/lorainelab/igb/genotyping/TwentyThreeAndMeVariationSym.java Added example data file: plugins/GenotypingResults/src/test/resources/sample23andMe.23andMe Added pom.xml: plugins/GenotypingResults/pom.xml Still to do: Add TwentyThreeAndMeVariationGlyph.java - a subclass of Glyph that draws a TwentyThreeAndMeVariationSym.java Add GenotypingResultsFactory.java - implements factory methods for adding above Glyphs to a SeqMapView
                stiwari8 Srishti Tiwari (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                stiwari8 Srishti Tiwari (Inactive) made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                stiwari8 Srishti Tiwari (Inactive) made changes -
                Assignee Srishti Tiwari [ stiwari8 ]
                ann.loraine Ann Loraine made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                ann.loraine Ann Loraine made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]

                  People

                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    ann.loraine Ann Loraine
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                    Dates

                    • Created:
                      Updated:
                      Resolved: