[IGBF-2250] Add new module to IGB project POMs as dependency in the correct places - JIRA UNCC

Details

Type: Task
Status: Closed (View Workflow)
Priority: Critical
Resolution: Done
Affects Version/s: None
Fix Version/s: None
Labels:
None

Story Points:
0.5
Epic Link:
Show personal genotype
Sprint:
Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb

Description

There is now a new plugin module for the project.

For the next step, we need to add it to the various POMs in the project:

parent aggregator POM (as a module)

We will also likely need to add it to sub-project POMs - you will need to do some research to check that this is right!:

main - to ensure it gets packaged with IGB builds for testing
shared-lib-wrapper - to ensure it gets copied to the bundles location so that you can test while developing IGB

To test:

Build the project on your local computer
Unpack igb_exe.jar - check that the genotyping bundle is included
Look in "bundles" in the project directory; check that the genotyping bundle is in bundles/dynamic

Check for genotyping bundle while running IGB:

Run IGB using igb_exe.jar
Open the felix console
Check that the genotyping bundle is there

Attachments

Activity

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Ann Loraine created issue - 02/Feb/20 9:02 PM

Ann Loraine made changes - 02/Feb/20 9:02 PM

Field	Original Value	New Value
Epic Link		~~IGBF-2246~~ [ 18393 ]

Ann Loraine made changes - 03/Feb/20 8:46 AM

Priority

Major [ 3 ]

Blocker [ 1 ]

Ann Loraine made changes - 03/Feb/20 8:46 AM

Priority

Blocker [ 1 ]

Critical [ 2 ]

Ann Loraine made changes - 03/Feb/20 8:47 AM

Rank

Ranked higher

Srishti Tiwari (Inactive) made changes - 13/Feb/20 10:59 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

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Srishti Tiwari (Inactive) added a comment - 13/Feb/20 11:24 AM

Ready for first-level review:

https://bitbucket.org/srishtitiwari/integrated-genome-browser/commits/6468f37

Verified bundles directory "bundles/dynamic", igb_exe.jar and Felix console and found that the genotyping bundle is included.

Show

Srishti Tiwari (Inactive) added a comment - 13/Feb/20 11:24 AM Ready for first-level review: https://bitbucket.org/srishtitiwari/integrated-genome-browser/commits/6468f37 Verified bundles directory "bundles/dynamic", igb_exe.jar and Felix console and found that the genotyping bundle is included.

Srishti Tiwari (Inactive) made changes - 13/Feb/20 11:24 AM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Srishti Tiwari (Inactive) made changes - 13/Feb/20 11:24 AM

Assignee

Srishti Tiwari [ stiwari8 ]

Ann Loraine made changes - 14/Feb/20 10:22 AM

Assignee

Ann Loraine [ aloraine ]

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Ann Loraine added a comment - 14/Feb/20 10:23 AM

I did not do functional review as the changes looked correct.
Please submit PR.

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Ann Loraine added a comment - 14/Feb/20 10:23 AM I did not do functional review as the changes looked correct. Please submit PR.

Ann Loraine made changes - 14/Feb/20 10:23 AM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Ann Loraine made changes - 14/Feb/20 10:23 AM

Status

First Level Review in Progress [ 10301 ]

Ready for Pull Request [ 10304 ]

Ann Loraine made changes - 14/Feb/20 10:23 AM

Assignee

Ann Loraine [ aloraine ]

Srishti Tiwari [ stiwari8 ]

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Srishti Tiwari (Inactive) added a comment - 14/Feb/20 12:49 PM

PR Submitted:

https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/771/igbf-2250-add-new-module-to-igb-project/diff

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Srishti Tiwari (Inactive) added a comment - 14/Feb/20 12:49 PM PR Submitted: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/771/igbf-2250-add-new-module-to-igb-project/diff

Srishti Tiwari (Inactive) made changes - 14/Feb/20 12:49 PM

Status

Ready for Pull Request [ 10304 ]

Pull Request Submitted [ 10101 ]

Srishti Tiwari (Inactive) made changes - 14/Feb/20 12:49 PM

Assignee

Srishti Tiwari [ stiwari8 ]

Ann Loraine [ aloraine ]

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Ann Loraine added a comment - 14/Feb/20 1:19 PM

Merged and ready for testing.

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Ann Loraine added a comment - 14/Feb/20 1:19 PM Merged and ready for testing.

Ann Loraine made changes - 14/Feb/20 1:30 PM

Status

Pull Request Submitted [ 10101 ]

Reviewing Pull Request [ 10303 ]

Ann Loraine made changes - 14/Feb/20 1:30 PM

Status

Reviewing Pull Request [ 10303 ]

To-Do [ 10305 ]

Ann Loraine made changes - 14/Feb/20 1:30 PM

Assignee

Ann Loraine [ aloraine ]

Srishti Tiwari [ stiwari8 ]

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Ann Loraine added a comment - 14/Feb/20 1:32 PM

Srishti Tiwari - can you check into why the build has failed on master branch?

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Ann Loraine added a comment - 14/Feb/20 1:32 PM Srishti Tiwari - can you check into why the build has failed on master branch?

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Ann Loraine added a comment - 14/Feb/20 1:33 PM

Srishti Tiwari - never mind — it is a problem with https://nexus.bioviz.org

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Ann Loraine added a comment - 14/Feb/20 1:33 PM Srishti Tiwari - never mind — it is a problem with https://nexus.bioviz.org

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Ann Loraine added a comment - 14/Feb/20 1:39 PM

Rebooted apache on nexus.bioviz.org.

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Ann Loraine added a comment - 14/Feb/20 1:39 PM Rebooted apache on nexus.bioviz.org.

Ann Loraine made changes - 18/Feb/20 7:00 AM

Sprint

Spring 3 : 3 Feb to 14 Feb [ 86 ]

Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 21 Feb [ 86, 87 ]

Ann Loraine made changes - 18/Feb/20 7:00 AM

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Srishti Tiwari (Inactive) added a comment - 18/Feb/20 10:35 AM

Hi Professor,
Is there anything more that needs to be done on this ticket?

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Srishti Tiwari (Inactive) added a comment - 18/Feb/20 10:35 AM Hi Professor, Is there anything more that needs to be done on this ticket?

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Ann Loraine added a comment - 18/Feb/20 10:53 AM

Srishti Tiwari It now working fine. The problem was due to nexus.bioviz.org being down.

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Ann Loraine added a comment - 18/Feb/20 10:53 AM Srishti Tiwari It now working fine. The problem was due to nexus.bioviz.org being down.