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  1. IGB
  2. IGBF-2258

Make class for default Primer blast options

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None
    • Story Points:
      0.5
    • Sprint:
      Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10

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          ann.loraine Ann Loraine added a comment -

          Since there are only a small number of species supported by option "Genomes for selected organisms (primary reference assembly only)," could you add some logic that only shows this option when genomes for those particular species are being shown?
          If you feel this can be done as a new ticket, it would be fine to create a new one. If you think this is a good idea, please go ahead and do it and add it to the current sprint.

          Show
          ann.loraine Ann Loraine added a comment - Since there are only a small number of species supported by option "Genomes for selected organisms (primary reference assembly only)," could you add some logic that only shows this option when genomes for those particular species are being shown? If you feel this can be done as a new ticket, it would be fine to create a new one. If you think this is a good idea, please go ahead and do it and add it to the current sprint.
          Hide
          pooja.nikhare Pooja Nikhare (Inactive) added a comment -

          Yes, It can be done. Created a Jira Ticket.
          Adding a failing test case is giving a wrong impression and Pipeline build also fails. So I did not add test case.

          Show
          pooja.nikhare Pooja Nikhare (Inactive) added a comment - Yes, It can be done. Created a Jira Ticket. Adding a failing test case is giving a wrong impression and Pipeline build also fails. So I did not add test case.
          Hide
          ann.loraine Ann Loraine added a comment -

          OK good!

          Regarding failing test case:

          Sorry, I was not clear enough about that. What I meant: A test that expects a particular type of error to occur when a function is given incorrect input.
          I was thinking of something like this:

          Show
          ann.loraine Ann Loraine added a comment - OK good! Regarding failing test case: Sorry, I was not clear enough about that. What I meant: A test that expects a particular type of error to occur when a function is given incorrect input. I was thinking of something like this: https://www.baeldung.com/junit-assert-exception
          Hide
          pooja.nikhare Pooja Nikhare (Inactive) added a comment -

          Added test case and made changes on selecting the option "Genomes for selected organisms (primary reference assembly only)".

          Show
          pooja.nikhare Pooja Nikhare (Inactive) added a comment - Added test case and made changes on selecting the option "Genomes for selected organisms (primary reference assembly only)".
          Hide
          shamika Shamika Gajanan Kulkarni (Inactive) added a comment - - edited

          Pooja Nikhare suggested a few steps which I could take to review this ticket.
          "- In primer options tab
          – selecting any specific genome should the value accordingly in organism field.
          – change the database, then zoom on sym and right click. The menu title should show the
          primer blast with selected database.
          – Modify default parameters and test whether the application opens NCBI primer blast site.
          – Click on Reset Default button, All the modified values should reset.

          • Zoom in and select syms and right click to select "Primer Blast" option.
            if any errors arise or ncbi app doesnt open check the console log file"

          I have tested using the above steps and everything is working fine. I am sorry for the delay due to internet issues. Moving the ticket forward.

          Show
          shamika Shamika Gajanan Kulkarni (Inactive) added a comment - - edited Pooja Nikhare suggested a few steps which I could take to review this ticket. "- In primer options tab – selecting any specific genome should the value accordingly in organism field. – change the database, then zoom on sym and right click. The menu title should show the primer blast with selected database. – Modify default parameters and test whether the application opens NCBI primer blast site. – Click on Reset Default button, All the modified values should reset. Zoom in and select syms and right click to select "Primer Blast" option. if any errors arise or ncbi app doesnt open check the console log file" I have tested using the above steps and everything is working fine. I am sorry for the delay due to internet issues. Moving the ticket forward.

            People

            • Assignee:
              shamika Shamika Gajanan Kulkarni (Inactive)
              Reporter:
              pooja.nikhare Pooja Nikhare (Inactive)
            • Votes:
              0 Vote for this issue
              Watchers:
              4 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: