Pooja Nikhare suggested a few steps which I could take to review this ticket.
"- In primer options tab
– selecting any specific genome should the value accordingly in organism field.
– change the database, then zoom on sym and right click. The menu title should show the
primer blast with selected database.
– Modify default parameters and test whether the application opens NCBI primer blast site.
– Click on Reset Default button, All the modified values should reset.
- Zoom in and select syms and right click to select "Primer Blast" option.
if any errors arise or ncbi app doesnt open check the console log file"
I have tested using the above steps and everything is working fine. I am sorry for the delay due to internet issues. Moving the ticket forward.
Updates :
Prof. [~aloraine] - We have made changes to UI as per your feedback , Created class for default primer blast options.
Prutha Kulkarni and I are working on this as well as other task i.e
IGBF-2259as investigation task was a blocker for This task.We are now working on parameter passing part when we right click on selected sym with "Primer Blast Refseq mRNA" option.
Referring to the following URL to see default options :
https://www.ncbi.nlm.nih.gov/tools/primer-blast/index.cgi