Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:3
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Epic Link:
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Sprint:Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May, Spring 9 : 25 May to 8 Jun
Description
Currently, when users want to run ProtAnnot, they must select one or more gene models and then choose Tools > Start ProtAnnot.
This is fine, but it would be even better if they could also select one or more gene models, right-click on the selected models to trigger a context menu, and then choose an option "Start ProtAnnot" from there.
How this works:
- An App can add an item to the right-click context menu by implementing org.lorainelab.igb.menu.api.AnnotationContextMenuProvider
- The App must also declare this to be a service using standard SCR annotations
As an example, see:
- NCBIPrimer in https://bitbucket.org/lorainelab/experimental-apps-for-igb
- Note: We may be moving NCBIPrimer to its own repository soon. To find it, check the IGB Apps project in BitBucket: https://bitbucket.org/account/user/lorainelab/projects/IAQ
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Attachments
Issue Links
- is blocked by
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IGBF-937 Make InterproScan default tab upon opening ProtAnnot
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1908 [ 17998 ] |
| Rank | Ranked higher |
| Sprint | Spring 5 : 16 Mar to 27 Mar [ 90 ] | Spring 6 : 30 Mar to Apr 10 [ 91 ] |
| Rank | Ranked lower |
| Assignee | Shamika Gajanan Kulkarni [ shamika ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Spring 6 : 30 Mar to Apr 10 [ 91 ] | Spring 5 : 16 Mar to 27 Mar [ 90 ] |
It is fine.
| Sprint | Spring 5 : 16 Mar to 27 Mar [ 90 ] | Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10 [ 90, 91 ] |
| Rank | Ranked higher |
The changes as discussed are present in the link below.
https://bitbucket.org/skulka2710/protannot-shamika/branch/IGBF-2293#diff
Kindly review.
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Shamika Gajanan Kulkarni [ shamika ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
The code looks great. Please submit PR.
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Ann Loraine [ aloraine ] | Shamika Gajanan Kulkarni [ shamika ] |
Thank you Prof. [~aloraine]. PR submitted.
https://bitbucket.org/lorainelab/protannot/pull-requests/11/igbf-2293-enable-right-click-menu-entry/diff
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Shamika Gajanan Kulkarni [ shamika ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Merged to master branch.
| Sprint | Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10 [ 90, 91 ] | Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr [ 90, 91, 92 ] |
| Rank | Ranked higher |
| Sprint | Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr [ 90, 91, 92 ] | Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May [ 90, 91, 92, 93 ] |
| Rank | Ranked higher |
| Sprint | Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May [ 90, 91, 92, 93 ] | Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May [ 90, 91, 92, 93, 94 ] |
| Rank | Ranked higher |
| Sprint | Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May [ 90, 91, 92, 93, 94 ] | Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May, Spring 9 : 25 May to 8 Jun [ 90, 91, 92, 93, 94, 95 ] |
| Rank | Ranked higher |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Nowlan Freese [ nfreese ] |
Tested on Mac with 9.1.6 Jar
Added https://bitbucket.org/lorainelab/protannot/downloads/ as new app repository.
With ProtAnnot installed, able to right-click on gene model(s) and select Start ProtAnnot.
Closing issue.
| Attachment | Screen Shot 2020-05-26 at 5.14.12 PM.png [ 14738 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Ann Loraine [ aloraine ] |
I have moved this to Current Sprint. I hope its okay to do so Prof. [~aloraine]