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  1. IGB
  2. IGBF-2316

Send blast parsing code pointers to Alex S.

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None
    • Story Points:
      0.25
    • Sprint:
      Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May

      Description

      In IGB, a user can right-click an item in the display and select an option to run a BLAST search at NCBI. Currently there are two options - BLASTX and BLASTP.

      Alex Sullivan, a developer in Nick Provart's group, has asked for a pointer to the part of the IGB code base that implements this feature. He is interested in implementing something similar on the BAR Web site maintained in the Provart lab.

      Please look up where this is in the code and send an email to Alex letting him know.

      Alex's email: alexander.sullivan@mail.utoronto.ca

        Attachments

          Activity

          Hide
          noor91zahara Noor Zahara added a comment -

          The logic for this is written in ../plugins/NCBIBlast/src/main/java/apollo/NCBIBlastPopupListener.java

          Ann Loraine - Let me know if I can email the same to him.

          Show
          noor91zahara Noor Zahara added a comment - The logic for this is written in ../plugins/NCBIBlast/src/main/java/apollo/NCBIBlastPopupListener.java Ann Loraine - Let me know if I can email the same to him.
          Hide
          aloraine Ann Loraine added a comment -

          Sure, that would be fine!

          Show
          aloraine Ann Loraine added a comment - Sure, that would be fine!
          Hide
          noor91zahara Noor Zahara added a comment -

          Email sent to Alex.

          Noor Zahara <nzahara@uncc.edu>
          12:15 PM (0 minutes ago)
          to alexander.sullivan, Ann

          Hi Alex,

          Below is a pointer in the IGB codebase where you can look at the functionality.

          ../plugins/NCBIBlast/src/main/java/apollo/NCBIBlastPopupListener.java

          Kindly let us know if you have any questions.

          Thank you,
          Noor Zahara

          Show
          noor91zahara Noor Zahara added a comment - Email sent to Alex. Noor Zahara <nzahara@uncc.edu> 12:15 PM (0 minutes ago) to alexander.sullivan, Ann Hi Alex, Below is a pointer in the IGB codebase where you can look at the functionality. ../plugins/NCBIBlast/src/main/java/apollo/NCBIBlastPopupListener.java Kindly let us know if you have any questions. Thank you, Noor Zahara
          Hide
          aloraine Ann Loraine added a comment -

          Noor Zahara - Please close this ticket.

          Show
          aloraine Ann Loraine added a comment - Noor Zahara - Please close this ticket.

            People

            • Assignee:
              noor91zahara Noor Zahara
              Reporter:
              aloraine Ann Loraine
            • Votes:
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              Watchers:
              2 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: