Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.25
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Epic Link:
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Sprint:Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May
Description
In IGB, a user can right-click an item in the display and select an option to run a BLAST search at NCBI. Currently there are two options - BLASTX and BLASTP.
Alex Sullivan, a developer in Nick Provart's group, has asked for a pointer to the part of the IGB code base that implements this feature. He is interested in implementing something similar on the BAR Web site maintained in the Provart lab.
Please look up where this is in the code and send an email to Alex letting him know.
Alex's email: alexander.sullivan@mail.utoronto.ca
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1531 [ 17617 ] |
| Rank | Ranked higher |
| Assignee | Ann Loraine [ aloraine ] |
| Sprint | Spring 6 : 30 Mar to Apr 10 [ 91 ] | Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr [ 91, 92 ] |
| Rank | Ranked higher |
| Rank | Ranked higher |
| Rank | Ranked higher |
| Sprint | Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr [ 91, 92 ] | Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May [ 91, 92, 93 ] |
| Rank | Ranked higher |
| Rank | Ranked higher |
| Assignee | Noor Zahara [ noor91zahara ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Sure, that would be fine!
Email sent to Alex.
Noor Zahara <nzahara@uncc.edu>
12:15 PM (0 minutes ago)
to alexander.sullivan, Ann
Hi Alex,
Below is a pointer in the IGB codebase where you can look at the functionality.
../plugins/NCBIBlast/src/main/java/apollo/NCBIBlastPopupListener.java
Kindly let us know if you have any questions.
Thank you,
Noor Zahara
| Sprint | Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May [ 91, 92, 93 ] | Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May [ 91, 92, 93, 94 ] |
| Rank | Ranked higher |
Noor Zahara - Please close this ticket.
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
The logic for this is written in ../plugins/NCBIBlast/src/main/java/apollo/NCBIBlastPopupListener.java
[~aloraine] - Let me know if I can email the same to him.