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  1. IGB
  2. IGBF-2329

Create GraphSyms from bai file directly

        Details

        • Type: New Feature
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          2
        • Epic Link:
        • Sprint:
          Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May

          Description

          Currently, the BAI file reader is converting the BAI file to a temporary graph file, which is then getting read.

          It would be far more efficient to simply read the file directly and create a GraphSym out of it.

          For this task, modify the code to create a GraphSym instead of a BedGraph intermediate file. To do this, make a new SymLoader class that will be returned by the FileLoader class.

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              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-2354 Refactor Index Hacking Data Structure

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-2482 Refactor Index Hacking code

              • Major - Major loss of function.
              • Closed

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                  People

                  • Assignee:
                    pooja.nikhare Pooja Nikhare (Inactive)
                    Reporter:
                    ann.loraine Ann Loraine
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                    Dates

                    • Created:
                      Updated:
                      Resolved: