[IGBF-2400] Add genome for testing name collision - JIRA UNCC

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Type: Task
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: None
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Story Points:
1
Epic Link:
Improve IGB for users

Description

Add this genome to IGB Quickload - name collides with Camelina sativa.

https://www.medicinalgenomics.com/jamaican-lion-cannabis-genome/

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Ann Loraine created issue - 26/May/20 9:54 AM

Ann Loraine made changes - 26/May/20 9:54 AM

Field	Original Value	New Value
Epic Link		IGBF-1765 [ 17855 ]

Ann Loraine made changes - 26/May/20 9:54 AM

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Ann Loraine made changes - 26/May/20 9:54 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

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Ann Loraine added a comment - 26/May/20 9:55 AM - edited

Contacted Keith Allen for tips on whether this is the best reference assembly for the cultivated kind.

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Ann Loraine added a comment - 26/May/20 9:55 AM - edited Contacted Keith Allen for tips on whether this is the best reference assembly for the cultivated kind.

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Ann Loraine added a comment - 26/May/20 8:50 PM - edited

Use this:

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA73819

and this:

http://genome.ccbr.utoronto.ca/

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Ann Loraine added a comment - 26/May/20 8:50 PM - edited Use this: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA73819 and this: http://genome.ccbr.utoronto.ca/

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Ann Loraine added a comment - 26/May/20 9:36 PM - edited

Or could use this:

http://cannabisgenome.org/ from https://www.biorxiv.org/content/10.1101/458083v4

This genome version should be named:

C_sativa_CBDRx_Dec_2018

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Ann Loraine added a comment - 26/May/20 9:36 PM - edited Or could use this: http://cannabisgenome.org/ from https://www.biorxiv.org/content/10.1101/458083v4 This genome version should be named: C_sativa_CBDRx_Dec_2018

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Ann Loraine added a comment - 26/May/20 10:54 PM

Pushed new branch:

https://bitbucket.org/aloraine/integrated-genome-browser/branch/IGBF-2400

Changes species.txt by adding line for Cannabis sativa CBDRx.

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Ann Loraine added a comment - 26/May/20 10:54 PM Pushed new branch: https://bitbucket.org/aloraine/integrated-genome-browser/branch/IGBF-2400 Changes species.txt by adding line for Cannabis sativa CBDRx.