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  1. IGB
  2. IGBF-2400

Add genome for testing name collision

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          Add this genome to IGB Quickload - name collides with Camelina sativa.

          https://www.medicinalgenomics.com/jamaican-lion-cannabis-genome/

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              ann.loraine Ann Loraine added a comment - - edited

              Contacted Keith Allen for tips on whether this is the best reference assembly for the cultivated kind.

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              ann.loraine Ann Loraine added a comment - - edited Contacted Keith Allen for tips on whether this is the best reference assembly for the cultivated kind.
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              ann.loraine Ann Loraine added a comment - - edited

              Use this:

              https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA73819

              and this:

              http://genome.ccbr.utoronto.ca/

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              ann.loraine Ann Loraine added a comment - - edited Use this: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA73819 and this: http://genome.ccbr.utoronto.ca/
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              ann.loraine Ann Loraine added a comment - - edited

              Or could use this:

              This genome version should be named:

              C_sativa_CBDRx_Dec_2018

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              ann.loraine Ann Loraine added a comment - - edited Or could use this: http://cannabisgenome.org/ from https://www.biorxiv.org/content/10.1101/458083v4 This genome version should be named: C_sativa_CBDRx_Dec_2018
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              ann.loraine Ann Loraine added a comment -

              Pushed new branch:

              https://bitbucket.org/aloraine/integrated-genome-browser/branch/IGBF-2400

              Changes species.txt by adding line for Cannabis sativa CBDRx.

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              ann.loraine Ann Loraine added a comment - Pushed new branch: https://bitbucket.org/aloraine/integrated-genome-browser/branch/IGBF-2400 Changes species.txt by adding line for Cannabis sativa CBDRx.

                People

                • Assignee:
                  ann.loraine Ann Loraine
                  Reporter:
                  ann.loraine Ann Loraine
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                  • Created:
                    Updated:
                    Resolved: