Details
-
Type:
Bug
-
Status: Closed (View Workflow)
-
Priority:
Major
-
Resolution: Done
-
Affects Version/s: None
-
Fix Version/s: None
-
Labels:
-
Story Points:0.5
-
Epic Link:
-
Sprint:Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug
Description
The DAS (version 1) test that relies on this URL - http://genome.cse.ucsc.edu/cgi-bin/das/dsn - is now failing.
We should remove this test or create a mock object that will allow the test of our code to proceed even if the data source is not available.
However, since the UCSC DAS service is no longer actively supported at UCSC, we should eliminate it from the code base. The UCSC DAS1 server was the only DAS service available, so we should probably remove it from the code base.
Note: Removing DAS1 support will affect many places in the code, notably:
- Places where default data sources are configured - see IGB Preferences JSON file
- DAS module itself: "Core - DAS (data source) module"
- POM files that declare dependencies on the DAS module within IGB
Attachments
Issue Links
Activity
| Labels | Beginner |
| Description |
The DAS1 test that relies on this URL - http://genome.cse.ucsc.edu/cgi-bin/das/dsn - is now failing.
We should remove this test or create a mock object that will allow the test of our code to proceed even if the data source is not available. However, since the UCSC DAS1 service is no longer actively supported at UCSC, we should eliminate it from the code base. |
The DAS (version 1) test that relies on this URL - http://genome.cse.ucsc.edu/cgi-bin/das/dsn - is now failing.
We should remove this test or create a mock object that will allow the test of our code to proceed even if the data source is not available. However, since the UCSC DAS service is no longer actively supported at UCSC, we should eliminate it from the code base. The UCSC DAS1 server was the only DAS service available, so we should probably remove it from the code base. Note: Removing DAS1 support will affect many places in the code, notably: * Places where default data sources are configured - see IGB Preferences JSON file * DAS module itself: "Core - DAS (data source) module" * POM files that declare dependencies on the DAS module within IGB |
| Assignee | Ann Loraine [ aloraine ] |
| Summary | Ignore tests that rely on DAS1 server at UC Santa Cruz | Remove DAS v1 support (UCSC DAS v1 service not responding) |
| Epic Link | IGBF-1531 [ 17617 ] |
| Sprint | Summer 4: 14 Jul - 28 Jul [ 99 ] |
| Rank | Ranked higher |
| Assignee | Prutha Kulkarni [ prutha ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Attachment | Ignored-Testcases.png [ 14781 ] |
| Comment |
[ Commenting for future reference:
The test cases were already ignored when we try to build IGB using @Ignore annotation. Attaching the screenshot of the same. ] |
| Attachment | IGB Exception .png [ 14782 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Prutha Kulkarni [ prutha ] |
| Assignee | Shamika Gajanan Kulkarni [ shamika ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Shamika Gajanan Kulkarni [ shamika ] | Prutha Kulkarni [ prutha ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Sprint | Summer 4: 14 Jul - 28 Jul [ 99 ] | Summer 4: 14 Jul - 28 Jul, Summer 5: 29 Jul - 12 Aug [ 99, 100 ] |
| Rank | Ranked higher |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Prutha Kulkarni [ prutha ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Status | Post-merge Testing In Progress [ 10003 ] | To-Do [ 10305 ] |
| Assignee | Prutha Kulkarni [ prutha ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Prutha Kulkarni [ prutha ] |
| Assignee | Shamika Gajanan Kulkarni [ shamika ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Shamika Gajanan Kulkarni [ shamika ] | Prutha Kulkarni [ prutha ] |