Use "attach files" option under More menu in Jira ticket. This is better than embedding the image into the page because the image is too big.

I have attached the image.

I was able to load the data now.

I have tried to replicate the scene shown in the video. I was able to do it.

As mentioned in the description, the assignee has attached screenshots of:

• graphs loaded and configured to the same scale as each other, as shown in the video
• their user logged in and enrolled in the IGB on-line programming class.
  moving the ticket forward.
  cc: Sai Supreeth Segu

Prutha Kulkarni, Actually it is Step 4 in the given video and I have done it as well. I have attached a screenshot after the final step(Step 6).

Sai Supreeth Segu can you attach one more screenshot showing the gene. You can found that at timestamp 4:18 in the video.

Screenshot showing Gene TBATA data

Nice image Sai Supreeth Segu!

Scope increase: Please identify another gene that is also differentially expressed. The difference should be equally obvious to the eye - e.g., high peak in one scaled graph low peak in one or more other scaled graphs. (Use graphs from the "scale graph coverage" folder because these have been normalized to account for experimental variation.)

Another gene where there is a peak in one scaled coverage and have no values in other scaled coverages.

Thank you for finding this!

One goal of IGB as a visualization tool is to make it easier for scientists to create an illustrations that tell stories about their data, and also show enough information to convince the viewer that the story is correct.

I have a follow-up request:

• Can you adjust the graph scales so that all three graphs have the same minimum and maximum settings?
• Can you also pick a maximum setting (for all three graphs) that lets us see more detail in the graph above the gene you found - peaks, valleys, etc?

If you realize the gene does not fit the criterion, don't worry about it - stick with the same gene. A major goal for doing this is for you to get experience with using IGB so that you can better write code for the scientists using IGB, and to experience the scientific process and steps they go through.

(This is the last change request.)

I am facing issues while setting min and max values. I am unable to save the graph after making this change and the error displayed is "Must Select only one track". But I can make changes to min and max values only after clicking the button "Select All".

Screenshot of Error for saving the graph

Advice to next person who does this on-boarding ticket:

• If you get stuck on anything, contact the previous person (or people) who worked on this to get help.

I have set a maximum value of 200 for all the three graphs for better view of the peaks, valleys of the graph.

I was able to set Minimum and Maximum for all the graphs but I was getting an error when I am saving the graph.

Sai Supreeth Segu - Kindly solve the issue and then push to first level review.

Question for Sai Supreeth Segu: Can you let me know why you were trying to save the graph? I wonder if maybe there was some confusion between the "save" function for tracks and the "take a picture" function? IGB has a feature that lets you create an image file that shows all or part of the IGB user interface. Was this the feature that you were trying to use? To use that feature, you can click the toolbar icon that looks like a camera.

Irvin Naylor - You're "up next" to do this on-boarding training. Sai Supreeth Segu - could you show Irvin Naylor what you've picked up from using IGB thus far? It would be super useful also if Sai Supreeth Segu and Irvin Naylor can make a note of aspects you found confusing or strange as this will help us identify aspects of the UI that need improvement.

Irvin Naylor - I think you have missed this part.
i) Upload an image with graphs loaded and configured to the same scale as each other, as shown in the video and also please go through the follow-up request by Dr. [~aloraine]. These are requests provided by the Professor from the above comments.

Request 1:

Scope increase: Please identify another gene that is also differentially expressed. The difference should be equally obvious to the eye - e.g., a high peak in one scaled graph low peak in one or more other scaled graphs. (Use graphs from the "scale graph coverage" folder because these have been normalized to account for experimental variation.)

Request 2:

One goal of IGB as a visualization tool is to make it easier for scientists to create illustrations that tell stories about their data, and also show enough information to convince the viewer that the story is correct.

I have a follow-up request:

Can you adjust the graph scales so that all three graphs have the same minimum and maximum settings?
Can you also pick a maximum setting (for all three graphs) that lets us see more detail in the graph above the gene you found - peaks, valleys, etc?
If you realize the gene does not fit the criterion, don't worry about it - stick with the same gene. A major goal for doing this is for you to get experience with using IGB so that you can better write code for the scientists using IGB, and to experience the scientific process and steps they go through.