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  1. IGB
  2. IGBF-2523

Investigate: Is it possible to implement IGBF-1443 as an App that can run in IGB 9.1.4

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None
    • Story Points:
      2
    • Sprint:
      Fall 1: 14 Sep - 25 Sep, Fall 2: 28 Sep - 9 Oct, Fall 3: Oct 12 - Oct 23, Fall 4 Oct 26 - Nov 6

      Description

      A long-term goal of the IGB project is to enable developers to add new operator functions as plug-able IGB Apps.

      As an example, we would like for a developer in the community to implement a new type of depth graph as an App.

      However, our current architecture may not support this very well.

      For this task, please do a deep dive into the implementation of the "soft clip depth graph" operator (IGBF-1443) and answer the question:

      • Could this have been implemented as an IGB App?

      In other words, could a developer implement this same functionality using IGB extensions? Or does the platform itself (e.g, SeqUtils and some of the other classes) need to be modified to add the new functionality?

      Note that this is an architecture question and also an OSGi services question.

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            Hide
            aloraine Ann Loraine added a comment -

            Noor Zahara - please submit PR.

            Show
            aloraine Ann Loraine added a comment - Noor Zahara - please submit PR.
            Hide
            noor91zahara Noor Zahara added a comment -

            Ann Loraine - It is a new repository. It should be added to larainelab repositories. Mostly ownership transfer is needed right?

            Show
            noor91zahara Noor Zahara added a comment - Ann Loraine - It is a new repository. It should be added to larainelab repositories. Mostly ownership transfer is needed right?
            Hide
            aloraine Ann Loraine added a comment - - edited

            You can keep in your account and LoraineLab can fork it. Or, you can transfer it to LoraineLab. I prefer the first option, like we did with Genome Dashboard by Sameer Shanbhag.
            Please indicate what you would like to do.

            Show
            aloraine Ann Loraine added a comment - - edited You can keep in your account and LoraineLab can fork it. Or, you can transfer it to LoraineLab. I prefer the first option, like we did with Genome Dashboard by Sameer Shanbhag . Please indicate what you would like to do.
            Hide
            noor91zahara Noor Zahara added a comment -

            Forking is a good option. I am fine that. Thanks!

            Show
            noor91zahara Noor Zahara added a comment - Forking is a good option. I am fine that. Thanks!
            Show
            aloraine Ann Loraine added a comment - Forked: https://bitbucket.org/lorainelab/softclip_track_operation/

              People

              • Assignee:
                noor91zahara Noor Zahara
                Reporter:
                aloraine Ann Loraine
              • Votes:
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                Dates

                • Created:
                  Updated:
                  Resolved: