Details
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Type: Bug
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:0.5
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Epic Link:
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Sprint:Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20, Fall 6 Nov 30 - Dec 11, Fall 7 Dec 14 - Dec 23, Winter 1 Dec 28 - Jan 8
Description
We now have a new IGB App that creates graphs from BAM files using only the soft clips.
The repository is here:
https://bitbucket.org/lorainelab/softclip_track_operation/src/master/
The POM.xml is configured to ensure that when you build the project, the file AppDescription.md gets base64-encoded and included in the repository.xml file.
This is required so that the information contained in the file gets shown to the user when they click on the app in the App Manager window within IGB.
However, this encoding is not happening for some reason.
Investigate why not.
For an example of this correctly working, see the other Apps in the IGB Apps Project.
Attachments
Activity
Ann Loraine
created issue -
Ann Loraine
made changes -
Field | Original Value | New Value |
---|---|---|
Epic Link | IGBF-1765 [ 17855 ] |
Ann Loraine
made changes -
Labels | Beginner |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Sai Supreeth Segu (Inactive)
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Sai Supreeth Segu (Inactive)
made changes -
Assignee | Sai Supreeth Segu [ ssegu ] |
Sai Supreeth Segu (Inactive)
made changes -
Status | In Progress [ 3 ] | To-Do [ 10305 ] |
Sai Supreeth Segu (Inactive)
made changes -
Assignee | Sai Supreeth Segu [ ssegu ] | Noor Zahara [ noor91zahara ] |
Nowlan Freese
made changes -
Description |
We now have a new IGB App that creates graphs from BAM files using only the soft clips.
The repository is here: https://bitbucket.org/lorainelab/softclip_track_operation/src/master/ The POM.xml is configured to ensure that when you build the project, the file AppDescription.md gets base64-encoded and included in the repository.xml file. This is required so that the information contained in the file gets shown to the user when the click on the app in the App Manager window within IGB. However, this encoding is not happening for some reason. Investigate why not. For an example of this correctly working, see the other Apps in the IGB Apps Project. |
We now have a new IGB App that creates graphs from BAM files using only the soft clips.
The repository is here: https://bitbucket.org/lorainelab/softclip_track_operation/src/master/ The POM.xml is configured to ensure that when you build the project, the file AppDescription.md gets base64-encoded and included in the repository.xml file. This is required so that the information contained in the file gets shown to the user when they click on the app in the App Manager window within IGB. However, this encoding is not happening for some reason. Investigate why not. For an example of this correctly working, see the other Apps in the IGB Apps Project. |
Irvin Naylor (Inactive)
made changes -
Assignee | Noor Zahara [ noor91zahara ] | Irvin Naylor [ inaylor ] |
Irvin Naylor (Inactive)
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Irvin Naylor (Inactive)
made changes -
Status | In Progress [ 3 ] | To-Do [ 10305 ] |
Ann Loraine
made changes -
Sprint | Fall 4 Oct 26 - Nov 6 [ 107 ] | Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20 [ 107, 108 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Irvin Naylor (Inactive)
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Irvin Naylor (Inactive)
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Ann Loraine
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Ann Loraine
made changes -
Assignee | Irvin Naylor [ inaylor ] | Ann Loraine [ aloraine ] |
Ann Loraine
made changes -
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] | Irvin Naylor [ inaylor ] |
Irvin Naylor (Inactive)
made changes -
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Irvin Naylor (Inactive)
made changes -
Assignee | Irvin Naylor [ inaylor ] |
Ann Loraine
made changes -
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Ann Loraine
made changes -
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Noor Zahara (Inactive)
made changes -
Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Noor Zahara (Inactive)
made changes -
Assignee | Noor Zahara [ noor91zahara ] |
Noor Zahara (Inactive)
made changes -
Status | Post-merge Testing In Progress [ 10003 ] | To-Do [ 10305 ] |
Noor Zahara (Inactive)
made changes -
Assignee | Noor Zahara [ noor91zahara ] | Irvin Naylor [ inaylor ] |
Irvin Naylor (Inactive)
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Irvin Naylor (Inactive)
made changes -
Status | In Progress [ 3 ] | To-Do [ 10305 ] |
Ann Loraine
made changes -
Sprint | Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20 [ 107, 108 ] | Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20, Fall 6 Nov 23 - Dec 4 [ 107, 108, 109 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Irvin Naylor (Inactive)
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Irvin Naylor (Inactive)
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Irvin Naylor (Inactive)
made changes -
Assignee | Irvin Naylor [ inaylor ] |
Sai Supreeth Segu (Inactive)
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Sai Supreeth Segu (Inactive)
made changes -
Assignee | Sai Supreeth Segu [ ssegu ] |
Sai Supreeth Segu (Inactive)
made changes -
Attachment | SoftClip_Operation.png [ 14998 ] |
Sai Supreeth Segu (Inactive)
made changes -
Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
Sai Supreeth Segu (Inactive)
made changes -
Assignee | Sai Supreeth Segu [ ssegu ] |
Ann Loraine
made changes -
Sprint | Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20, Fall 6 Nov 30 - Dec 11 [ 107, 108, 109 ] | Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20, Fall 6 Nov 30 - Dec 11, Fall 7 Dec 14 - Dec 23 [ 107, 108, 109, 110 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Ann Loraine
made changes -
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Ann Loraine
made changes -
Assignee | Irvin Naylor [ inaylor ] |
Irvin Naylor (Inactive)
made changes -
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Irvin Naylor (Inactive)
made changes -
Assignee | Irvin Naylor [ inaylor ] |
Ann Loraine
made changes -
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Ann Loraine
made changes -
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Ann Loraine
made changes -
Sprint | Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20, Fall 6 Nov 30 - Dec 11, Fall 7 Dec 14 - Dec 23 [ 107, 108, 109, 110 ] | Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20, Fall 6 Nov 30 - Dec 11, Fall 7 Dec 14 - Dec 23, Winter 1 Dec 28 - Jan 8 [ 107, 108, 109, 110, 111 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Link | This issue relates to IGBF-2712 [ IGBF-2712 ] |
Chester Dias (Inactive)
made changes -
Assignee | Chester Dias [ cdias1 ] |
Chester Dias (Inactive)
made changes -
Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Chester Dias (Inactive)
made changes -
Assignee | Chester Dias [ cdias1 ] | Irvin Naylor [ inaylor ] |
Chester Dias (Inactive)
made changes -
Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Irvin Naylor (Inactive)
made changes -
Assignee | Irvin Naylor [ inaylor ] |
GroupId is given as com.igb instead of org.lorainelab.igb
cc: [~aloraine] and Noor Zahara