Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:0.5
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Epic Link:
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Sprint:Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20, Fall 6 Nov 30 - Dec 11, Fall 7 Dec 14 - Dec 23, Winter 1 Dec 28 - Jan 8
Description
We now have a new IGB App that creates graphs from BAM files using only the soft clips.
The repository is here:
https://bitbucket.org/lorainelab/softclip_track_operation/src/master/
The POM.xml is configured to ensure that when you build the project, the file AppDescription.md gets base64-encoded and included in the repository.xml file.
This is required so that the information contained in the file gets shown to the user when they click on the app in the App Manager window within IGB.
However, this encoding is not happening for some reason.
Investigate why not.
For an example of this correctly working, see the other Apps in the IGB Apps Project.
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1765 [ 17855 ] |
| Labels | Beginner |
| Assignee | Ann Loraine [ aloraine ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Sai Supreeth Segu [ ssegu ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Assignee | Sai Supreeth Segu [ ssegu ] | Noor Zahara [ noor91zahara ] |
| Description |
We now have a new IGB App that creates graphs from BAM files using only the soft clips.
The repository is here: https://bitbucket.org/lorainelab/softclip_track_operation/src/master/ The POM.xml is configured to ensure that when you build the project, the file AppDescription.md gets base64-encoded and included in the repository.xml file. This is required so that the information contained in the file gets shown to the user when the click on the app in the App Manager window within IGB. However, this encoding is not happening for some reason. Investigate why not. For an example of this correctly working, see the other Apps in the IGB Apps Project. |
We now have a new IGB App that creates graphs from BAM files using only the soft clips.
The repository is here: https://bitbucket.org/lorainelab/softclip_track_operation/src/master/ The POM.xml is configured to ensure that when you build the project, the file AppDescription.md gets base64-encoded and included in the repository.xml file. This is required so that the information contained in the file gets shown to the user when they click on the app in the App Manager window within IGB. However, this encoding is not happening for some reason. Investigate why not. For an example of this correctly working, see the other Apps in the IGB Apps Project. |
| Assignee | Noor Zahara [ noor91zahara ] | Irvin Naylor [ inaylor ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Sprint | Fall 4 Oct 26 - Nov 6 [ 107 ] | Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20 [ 107, 108 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Irvin Naylor [ inaylor ] | Ann Loraine [ aloraine ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Ann Loraine [ aloraine ] | Irvin Naylor [ inaylor ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Irvin Naylor [ inaylor ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Noor Zahara [ noor91zahara ] |
| Status | Post-merge Testing In Progress [ 10003 ] | To-Do [ 10305 ] |
| Assignee | Noor Zahara [ noor91zahara ] | Irvin Naylor [ inaylor ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Sprint | Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20 [ 107, 108 ] | Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20, Fall 6 Nov 23 - Dec 4 [ 107, 108, 109 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Irvin Naylor [ inaylor ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Sai Supreeth Segu [ ssegu ] |
| Attachment | SoftClip_Operation.png [ 14998 ] |
| Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Sai Supreeth Segu [ ssegu ] |
| Sprint | Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20, Fall 6 Nov 30 - Dec 11 [ 107, 108, 109 ] | Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20, Fall 6 Nov 30 - Dec 11, Fall 7 Dec 14 - Dec 23 [ 107, 108, 109, 110 ] |
| Rank | Ranked higher |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Irvin Naylor [ inaylor ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Irvin Naylor [ inaylor ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Sprint | Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20, Fall 6 Nov 30 - Dec 11, Fall 7 Dec 14 - Dec 23 [ 107, 108, 109, 110 ] | Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20, Fall 6 Nov 30 - Dec 11, Fall 7 Dec 14 - Dec 23, Winter 1 Dec 28 - Jan 8 [ 107, 108, 109, 110, 111 ] |
| Rank | Ranked higher |
| Link | This issue relates to IGBF-2712 [ IGBF-2712 ] |
| Assignee | Chester Dias [ cdias1 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Chester Dias [ cdias1 ] | Irvin Naylor [ inaylor ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Irvin Naylor [ inaylor ] |