Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.25
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Epic Link:
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Sprint:Fall 5 Nov 9 - Nov 20, Fall 6 Nov 30 - Dec 11
Description
Attachments
Activity
| Assignee | Sai Supreeth Segu [ ssegu ] | Nowlan Freese [ nfreese ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Everything looks good.
| Assignee | Sai Supreeth Segu [ ssegu ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Rank | Ranked higher |
| Sprint | Fall 5 Nov 9 - Nov 20 [ 108 ] | Fall 5 Nov 9 - Nov 20, Fall 6 Nov 23 - Dec 4 [ 108, 109 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Nowlan Freese [ nfreese ] |
Tested on Mac 10.14.6
Synonyms appear to be working correctly.
I tested multiple times, and the only issue I could identify was that when the user adds a version synonym file to the Personal Synonyms the prompt to restart IGB does not always appear.
| Assignee | Nowlan Freese [ nfreese ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Nowlan Freese [ nfreese ] |
Tested on Linux: this appears to be working correctly.
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Assignee | Philip Badzuh [ pbadzuh ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Following the steps in the linked wiki page, there is an error at step 7 ("Under preferences, in the data access tab, add the synonyms.txt file as a personal synonyms file.")
- After restarting IGB, the "A_new" species entry has an associated genome.
- Additional note: there doesn't seem to be a way to remove a personal synonyms file from the data sources configuration. Deleting the path to it in the 'data sources' panel and restarting IGB results in the path reappearing.
- Tested on macOS 10.15.6
- IGB 9.1.4 has this same issue
Please confirm on windows and linux to rule out a macOS-specific issue. Remember to reset preferences and delete the ~/.igb/ folder (something else on windows)
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Philip Badzuh [ pbadzuh ] |
| Rank | Ranked higher |
| Field | Original Value | New Value |
|---|---|---|
| Epic Link |
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Had a conversion with Dr. Nowlan Freese and he said that the issue was not replicated consistently. So, haven't labeled this as a bug and also a Jira ticket was not created. Moving the ticket to closed.