Annotation tracks are looking good. Like Sai Supreeth Segu, I was having a bit of trouble figuring out how to test the below sections when we test part 1 of outputting a graph track from a bam file.
Aside from that everything checked out as expected.
The mentioned sections:
Verify that the count above each junction is equal to the number of reads that matched that gap.
Find someplace where the matching Find Junctions operation using value 5 and value 10 have different scores. Identify the read(s) that matches that junction, and where where one side of the read is between 5 and 10 bases.