Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-2855

Investigate activating UCSC DAS source from External View tab

        Details

        • Story Points:
          2
        • Epic Link:
        • Sprint:
          Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28

          Description

          If the UCSC Distributed Annotation Service (DAS) data source is not active (see Preferences > Data Sources) then External View does not work. It shows a message stating that the genome is not available.

          This message is very cryptic because it does not explain to the user that they need to activate the UCSC DAS data source in order to show data in the External View tab.

          Investigate: Can we simply add a button or other user interface component that would let the user activate the required data source within the External View tab?

            Attachments

              Issue Links

              blocks

              Task - A task that needs to be done. IGBF-2863 Use UCSC JSON endpoint to get list of genomes for External View tab

              • Major - Major loss of function.
              • Closed

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-2864 Improve External View error message displayed when no genome is selected

              • Major - Major loss of function.
              • Closed
              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-2860 Disable Ensembl external view

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-2869 Investigate adding UCSC JSON API as a new data provider

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-2858 Write R or python notebook to compare data retrieved from UCSC DAS and JSON APIs

              • Major - Major loss of function.
              • To-Do

              Task - A task that needs to be done. IGBF-2793 Restore DASv1 support

              • Major - Major loss of function.
              • Closed

                Activity

                  People

                  • Assignee:
                    omarne Omkar Marne (Inactive)
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: