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      Currently the ensembl external view does not work, regardless of the genome shown.

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            ann.loraine Ann Loraine added a comment -

            Can't fix at this time because I can't figure out how to construct the URL needed to retrieve the image to be shown in the tabbed panel interface.

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            ann.loraine Ann Loraine added a comment - Can't fix at this time because I can't figure out how to construct the URL needed to retrieve the image to be shown in the tabbed panel interface.
            Hide
            ann.loraine Ann Loraine added a comment -

            Removed Ensembl option from the External View interface, added new testing code, updated comments, and reduced complexity a bit.
            See branch IGBF-2860 on fork https://bitbucket.org/aloraine/integrated-genome-browser.

            Nowlan Freese - could you review?

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            ann.loraine Ann Loraine added a comment - Removed Ensembl option from the External View interface, added new testing code, updated comments, and reduced complexity a bit. See branch IGBF-2860 on fork https://bitbucket.org/aloraine/integrated-genome-browser . Nowlan Freese - could you review?
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            nfreese Nowlan Freese added a comment - - edited

            Tested on Mac using branch installer.

            The ensembl external view option does not appear. UCSC external view continues to work correctly.

            Recommend pull request.

            Sidenote: I was able to debut the test file. It seems the @Ignore causes the Netbeans debugger to skip over any breakpoints in the tagged method. Need to remove the @Ignore and do a mvn clean install -DskipTests and then debug the test file.

            I also could not get the ensembl image to work. A quick search of the ensembl API was not able to find any obvious solution.

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            nfreese Nowlan Freese added a comment - - edited Tested on Mac using branch installer. The ensembl external view option does not appear. UCSC external view continues to work correctly. Recommend pull request. Sidenote: I was able to debut the test file. It seems the @Ignore causes the Netbeans debugger to skip over any breakpoints in the tagged method. Need to remove the @Ignore and do a mvn clean install -DskipTests and then debug the test file. I also could not get the ensembl image to work. A quick search of the ensembl API was not able to find any obvious solution.
            Hide
            ann.loraine Ann Loraine added a comment -

            PR is submitted and merged. Master branch installers are built and ready for final testing.

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            ann.loraine Ann Loraine added a comment - PR is submitted and merged. Master branch installers are built and ready for final testing.
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            nfreese Nowlan Freese added a comment -

            Tested on Mac using master installer.

            The Ensembl External View tab dropdown option does not appear. UCSC External View continues to work correctly.

            Closing issue.

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            nfreese Nowlan Freese added a comment - Tested on Mac using master installer. The Ensembl External View tab dropdown option does not appear. UCSC External View continues to work correctly. Closing issue.
            Hide
            omarne Omkar Marne (Inactive) added a comment -

            Tested on lnux using master.sh file. The ensemble option is not visible now in the dropdown box.

            Closing the issue

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            omarne Omkar Marne (Inactive) added a comment - Tested on lnux using master.sh file. The ensemble option is not visible now in the dropdown box. Closing the issue

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              • Assignee:
                ann.loraine Ann Loraine
                Reporter:
                ann.loraine Ann Loraine
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                  Updated:
                  Resolved: