Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:1
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Epic Link:
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Sprint:Spring 6 2021 May 31 - June 11
Description
To create a contents.txt file we just need following two fields from the API https://api.genome.ucsc.edu/list/hubGenomes?hubUrl=http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hub.txt.
1) Genome name
2) Description
To create genome file we need chromosome name and its size. We can get this information from the following API
https://api.genome.ucsc.edu/list/chromosomes?hubUrl=http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hub.txt;genome=CAST_EiJ;track=assembly
Attachments
Issue Links
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2831 [ 19524 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Chirag Chandrahas Shetty [ chirag24 ] |
| Description |
To create a contents.txt file we just need following two fields from the API.
1) Genome name 2) Description |
To create a contents.txt file we just need following two fields from the API https://api.genome.ucsc.edu/list/hubGenomes?hubUrl=http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hub.txt.
1) Genome name 2) Description |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Chirag Chandrahas Shetty [ chirag24 ] |
| Summary | Create contents.txt file using UCSC APIs | Create contents.txt and genome.txt file using UCSC APIs |
| Description |
To create a contents.txt file we just need following two fields from the API https://api.genome.ucsc.edu/list/hubGenomes?hubUrl=http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hub.txt.
1) Genome name 2) Description |
To create a contents.txt file we just need following two fields from the API https://api.genome.ucsc.edu/list/hubGenomes?hubUrl=http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hub.txt.
1) Genome name 2) Description To create genome file we need chromosome name and its size. We can get this information from the following API https://api.genome.ucsc.edu/list/chromosomes?hubUrl=http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hub.txt;genome=CAST_EiJ;track=assembly |
| Assignee | Irvin Naylor [ inaylor ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Tested create_resources.txt, the script returned the correctly formatted contents.txt and genome.txt file in the console. Recommending pull request.
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Irvin Naylor [ inaylor ] | Chirag Chandrahas Shetty [ chirag24 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Chirag Chandrahas Shetty [ chirag24 ] | Irvin Naylor [ inaylor ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Assignee | Irvin Naylor [ inaylor ] | Chirag Chandrahas Shetty [ chirag24 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Pull request has been merged to main on trackhub repo: https://bitbucket.org/Inaylor01/track-hub-converter-webapp/src/main/
Moving to closed.
diff: https://bitbucket.org/chirag06/track-hub-converter-webapp/commits/branch/IGBF-2875